Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9h19
         (535 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   4.5  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    21   7.9  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   7.9  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           21   7.9  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 9/34 (26%), Positives = 20/34 (58%)
 Frame = -1

Query: 112 VFFLKIIPYAHVIEVARHVDERVTHEGVTLLGQN 11
           V F++++P   +IE  +  ++    E V ++G+N
Sbjct: 339 VVFIQVLPRFLLIERPKKDEDEEEEEEVVVVGRN 372


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 6/15 (40%), Positives = 12/15 (80%)
 Frame = -1

Query: 508 YFIDDSSSVPRDVHV 464
           YF+D + ++P++ HV
Sbjct: 370 YFLDYNYTIPKEKHV 384


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -3

Query: 389 SGSTAPTPSCYTRCPRTCSGC 327
           S ST+P P+  T      SGC
Sbjct: 837 STSTSPRPASSTAATLVLSGC 857


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 6/15 (40%), Positives = 12/15 (80%)
 Frame = -1

Query: 508 YFIDDSSSVPRDVHV 464
           YF+D + ++P++ HV
Sbjct: 370 YFLDYNYTIPKEKHV 384


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,256
Number of Sequences: 438
Number of extensions: 2585
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15090993
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)