Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9h16
         (551 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|...    29   0.60 
SPAC1B3.08 |||COP9 signalosome complex subunit 12 |Schizosacchar...    27   2.4  
SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual       26   4.2  
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po...    26   4.2  
SPAC630.12 |||phosphoprotein phosphatase |Schizosaccharomyces po...    26   4.2  
SPBC1734.04 ||SPBC337.20|mannosyltransferase complex subunit, An...    25   7.4  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    25   7.4  
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c...    25   9.8  

>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 664

 Score = 28.7 bits (61), Expect = 0.60
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +2

Query: 164 SGSRSTFLCGRCRKRGALARRSKKE-YLTTVDQEHTCIHNL 283
           SG   TFL    +KR   + +SKKE YL  ++Q +   H L
Sbjct: 576 SGRNRTFLNRSSKKRAENSLKSKKELYLKNLNQRYQIAHEL 616


>SPAC1B3.08 |||COP9 signalosome complex subunit 12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 423

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 19/60 (31%), Positives = 25/60 (41%)
 Frame = +2

Query: 164 SGSRSTFLCGRCRKRGALARRSKKEYLTTVDQEHTCIHNLARNQQPPVAGKQSGEPFIVF 343
           SG+   F  G+C ++        K YLT       CI NL R     + GK +  P  VF
Sbjct: 313 SGNLGEF--GKCLQKNETLLAKTKIYLTLEGTRDLCIRNLFRKTW-IICGKSTRLPVSVF 369


>SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = -2

Query: 238 LFLGSPSQSTSLPAASTQKGTA 173
           L +GS +QS SLPA+S+Q  T+
Sbjct: 352 LDIGSDAQSPSLPASSSQMPTS 373


>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1313

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +1

Query: 7   SINISRAAVKVFLRIYQSQLNSSL 78
           SI IS AA  +   +YQS LNS L
Sbjct: 783 SIEISLAAEAIINYVYQSMLNSEL 806


>SPAC630.12 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 422

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +1

Query: 244 DHGRPRTHLYTQPCSEPATPSCGE 315
           D+ RPR  L   P   PA  SCGE
Sbjct: 206 DNSRPRILLSHVPLFRPAINSCGE 229


>SPBC1734.04 ||SPBC337.20|mannosyltransferase complex subunit, Anp
           family |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 430

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -3

Query: 195 RPHRKVLRDPEGDIKVTL 142
           RPH   LRDP GD  V +
Sbjct: 296 RPHLAYLRDPNGDPSVEM 313


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1217

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = -3

Query: 231 LDRLARAPRFRQRPHRKVLRDPEGDIKVTLRTLTD 127
           L+ L+  P F QR ++ +++   GD+  ++  +TD
Sbjct: 510 LNFLSSNPHFEQRQNQFIVKHYAGDVTYSITGMTD 544


>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1316

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = -3

Query: 273 IQVCSWSTVVKYSFLDRLARAPRFRQRPHRKVLRDPEGDIK 151
           + +C    VV+Y +L++ AR P   + P ++    P+ +I+
Sbjct: 73  VSICVVILVVRYRYLNKYARLP--HEAPIKEAKLGPDTNIR 111


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,391,988
Number of Sequences: 5004
Number of extensions: 50989
Number of successful extensions: 108
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)