Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9h16
         (551 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0110 + 1360699-1360873,1361301-1361524                           29   3.3  
07_03_0535 - 19198130-19198139,19199901-19199995,19200095-192001...    28   4.3  
12_01_0372 + 2867471-2867775,2867805-2867901,2868539-2868916           27   10.0 
01_01_0819 - 6387000-6387300,6387685-6387843,6387925-6388100,638...    27   10.0 

>10_01_0110 + 1360699-1360873,1361301-1361524
          Length = 132

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -3

Query: 213 APRFRQRPHRKVLRDPEGDIKVTLRTLTDVH 121
           +P+ RQ PHR+ L D   D +  L+ + D+H
Sbjct: 53  SPQRRQEPHRRALFDDSSD-ETMLKEMADMH 82


>07_03_0535 -
           19198130-19198139,19199901-19199995,19200095-19200154,
           19200241-19200349,19200438-19200604,19200694-19200813,
           19200901-19200987,19201068-19201196,19201284-19201362,
           19201451-19201530,19201646-19201726,19201812-19201874,
           19201963-19202139,19202381-19202476,19202610-19202729,
           19202825-19202933,19203016-19203235,19203320-19203405,
           19203491-19203552,19203649-19203685,19203790-19203848,
           19203952-19204037,19204142-19204313
          Length = 767

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = -3

Query: 231 LDRLARAPRFRQRPHRKVLRDPEGDIKV 148
           L+ L +AP+F+ +P  K + + +GDI V
Sbjct: 492 LEELEKAPKFKAKPLNKKILESKGDIGV 519


>12_01_0372 + 2867471-2867775,2867805-2867901,2868539-2868916
          Length = 259

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 18/63 (28%), Positives = 29/63 (46%)
 Frame = +2

Query: 122 CTSVRVRSVTFISPSGSRSTFLCGRCRKRGALARRSKKEYLTTVDQEHTCIHNLARNQQP 301
           C S   RS    SP G +S  + G C +       +KK+Y T ++ +   + +L +NQ  
Sbjct: 185 CVSSDGRSSAGGSP-GDKSPMVIGACTRCLMYCMVAKKDYPTCINCKQPSLVDLLQNQDA 243

Query: 302 PVA 310
             A
Sbjct: 244 AAA 246


>01_01_0819 -
           6387000-6387300,6387685-6387843,6387925-6388100,
           6389293-6389476,6389565-6389875
          Length = 376

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 482 FTKINLVVRYYVTSVSVGISNTRESNQLKLD 390
           F + N+ + YY+T   V I N +    LKLD
Sbjct: 164 FEEFNVTIVYYLTHYLVDIVNEKAGRVLKLD 194


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,990,747
Number of Sequences: 37544
Number of extensions: 324280
Number of successful extensions: 723
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)