Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9h16
         (551 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41542-2|AAR30212.1|  623|Caenorhabditis elegans Suppressor of p...    29   2.9  
U41542-1|AAR30211.1|  684|Caenorhabditis elegans Suppressor of p...    29   2.9  
Z22177-9|CAE18052.1|  110|Caenorhabditis elegans Hypothetical pr...    27   6.8  

>U41542-2|AAR30212.1|  623|Caenorhabditis elegans Suppressor of
           presenilin defectprotein 3, isoform b protein.
          Length = 623

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
 Frame = +2

Query: 167 GSRSTFLCGRCRKRG-ALARRSKKEYLTTVDQEH---TCIHNLA 286
           GS    LCG+C  RG  LA   ++    T D EH   TC H  A
Sbjct: 19  GSYKCHLCGQCFYRGCGLASHLRRHAPVTFDCEHCAYTCKHKYA 62


>U41542-1|AAR30211.1|  684|Caenorhabditis elegans Suppressor of
           presenilin defectprotein 3, isoform a protein.
          Length = 684

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
 Frame = +2

Query: 167 GSRSTFLCGRCRKRG-ALARRSKKEYLTTVDQEH---TCIHNLA 286
           GS    LCG+C  RG  LA   ++    T D EH   TC H  A
Sbjct: 19  GSYKCHLCGQCFYRGCGLASHLRRHAPVTFDCEHCAYTCKHKYA 62


>Z22177-9|CAE18052.1|  110|Caenorhabditis elegans Hypothetical
           protein ZK512.11 protein.
          Length = 110

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = +2

Query: 485 IITIVSVLFVVNKHKCYNIKKK 550
           ++ +V+V+FV+   KC+N+K K
Sbjct: 54  LVVLVAVIFVIVMAKCFNVKIK 75


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,335,352
Number of Sequences: 27780
Number of extensions: 294332
Number of successful extensions: 611
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)