Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc9g22
(722 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein L10... 243 2e-65
SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein L10a... 239 4e-64
SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S... 36 0.008
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 30 0.29
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 27 2.1
SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr 1... 27 2.7
SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch... 27 3.6
SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|c... 26 6.3
SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual 26 6.3
SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces... 26 6.3
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch... 26 6.3
SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|ch... 25 8.3
SPCC1739.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 25 8.3
SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|c... 25 8.3
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone... 25 8.3
>SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein
L10a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 216
Score = 243 bits (595), Expect = 2e-65
Identities = 123/215 (57%), Positives = 144/215 (66%)
Frame = +1
Query: 55 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPWPK 234
SKVS + V +L+ S++KKRNF ETVELQIGLKNYDPQ+DKRFSGT+KL +P P
Sbjct: 2 SKVSPANIRSSVETILKGSEEKKRNFTETVELQIGLKNYDPQRDKRFSGTIKLPNVPRPN 61
Query: 235 MQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPR 414
M +C+LGD D AK V M SE LIKQIPR
Sbjct: 62 MSICILGDAHDLDRAKHGGVDAMSVDDLKKLNKNKKLVKKLAKKYDAFIASEVLIKQIPR 121
Query: 415 LLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQN 594
LLGPGL+KAGKFP +SH + + KI EVK TIKFQ+KKVLCL VAVGHVDM ++LA N
Sbjct: 122 LLGPGLSKAGKFPSPVSHSDDLYGKIIEVKSTIKFQLKKVLCLGVAVGHVDMAEEQLAAN 181
Query: 595 VHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQRLY 699
+ L+INFLVSLLKK WQN+ SL +KSTMG P RLY
Sbjct: 182 LSLAINFLVSLLKKGWQNIGSLVIKSTMGKPYRLY 216
>SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein
L10a|Schizosaccharomyces pombe|chr 3|||Manual
Length = 216
Score = 239 bits (584), Expect = 4e-64
Identities = 120/215 (55%), Positives = 145/215 (67%)
Frame = +1
Query: 55 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPWPK 234
SKVS ++ V +L+ S++KKRNF ETVELQIGLKNYDPQ+DKRFSGT+KL +P P
Sbjct: 2 SKVSVASVRSNVEQILKGSEEKKRNFTETVELQIGLKNYDPQRDKRFSGTIKLPNVPRPN 61
Query: 235 MQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPR 414
M +C+LGD D AK V M SE LIKQIPR
Sbjct: 62 MAICILGDAHDLDRAKHGGVDAMSVDDLKKLNKNKKLVKKLAKKYDAFIASEVLIKQIPR 121
Query: 415 LLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQN 594
LLGPGL+KAGKFP +SH + + KI EVK TIKFQ+KKVLCL VAVGHV+M+ ++L N
Sbjct: 122 LLGPGLSKAGKFPSPVSHADDLYGKITEVKSTIKFQLKKVLCLGVAVGHVEMSEEQLIAN 181
Query: 595 VHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQRLY 699
+ L++NFLVSLLKK WQN+ SL +KSTMG P RLY
Sbjct: 182 IMLAVNFLVSLLKKGWQNIGSLVVKSTMGKPHRLY 216
>SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 373
Score = 35.5 bits (78), Expect = 0.008
Identities = 23/101 (22%), Positives = 45/101 (44%), Gaps = 5/101 (4%)
Frame = +1
Query: 388 ESLIKQIPRLLGPGLNKAGKFPGLLSHQ----ESMTQKIDEVKGTIKFQMKKVLCLSVAV 555
+ +I +PR+LG + K P + E + +++ G F +
Sbjct: 144 DRVIPMLPRILGKTFYQKSKVPVPVKISKGTAEQLKREVVSAYGATYFNSAPCSSFMIKC 203
Query: 556 GHVDMTPDELAQNVHLSINFLVS-LLKKHWQNVRSLHMKST 675
GHV T ELA+NV + F+ ++ + + S+H+K++
Sbjct: 204 GHVSNTSTELAENVESILQFVSKHIVPDGAKGIASIHLKTS 244
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 30.3 bits (65), Expect = 0.29
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Frame = +1
Query: 37 LTNKMSSKVSRDTLYE---CVNAVLQSSKDKKRNFLETVELQIGLKNYD-PQKDKRFSG 201
+T+K++ V ++ Y C N +++SS K NF +TV + +YD P+ D + G
Sbjct: 920 VTSKLNDLVIKEFTYPSSLCDNVLVRSSPSPKNNFDDTVFISYTSIDYDSPELDSVYEG 978
Score = 27.5 bits (58), Expect = 2.1
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
Frame = +1
Query: 481 TQKIDEVKGTIKFQMKK----VLCLSVAVGHVDMTPDEL----AQNVHLSINFLVSLLKK 636
T++I+ GT+ V LS+A+G+++ P L N H+S+ L L+K
Sbjct: 2682 TERINNTDGTVVSSHNPFVFFVNVLSMAIGNINDAPVRLNALLMDNAHVSLRRLFELVKN 2741
Query: 637 HW 642
H+
Sbjct: 2742 HY 2743
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 27.5 bits (58), Expect = 2.1
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 5/51 (9%)
Frame = +1
Query: 91 NAVLQSSKDKKRNFLETVELQIGL-----KNYDPQKDKRFSGTVKLKYIPW 228
N LQ K+RN L+++ L K+ D K FS KLK +PW
Sbjct: 357 NVSLQEDHGKRRN-LKSLRSSRNLHQQSRKSLDENKPNSFSNVSKLKRLPW 406
Score = 26.6 bits (56), Expect = 3.6
Identities = 10/34 (29%), Positives = 15/34 (44%)
Frame = +3
Query: 522 NEEGVVSFCSSWPCGHDS**ACSECASFHQLPCV 623
NE C W C D C++C ++ + CV
Sbjct: 257 NEPSNCKVCKKW-CAFDFSVQCADCKKYYHMDCV 289
>SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 661
Score = 27.1 bits (57), Expect = 2.7
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = -1
Query: 581 SSGVMSTWPTATERHNTFFIWNLMVPLTSSIFC 483
S+G ++ T T R F WN+++ +++FC
Sbjct: 236 STGYKGSYLTVTNRDAVFVGWNIVIGGFATVFC 268
>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 701
Score = 26.6 bits (56), Expect = 3.6
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 567 HDS**ACSECASFHQLPCVTAQETLAEC 650
H S + S ++HQL CV Q+ L+EC
Sbjct: 52 HPSINSLSSFQTYHQLLCVLEQKHLSEC 79
>SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|chr
2|||Manual
Length = 279
Score = 25.8 bits (54), Expect = 6.3
Identities = 12/54 (22%), Positives = 23/54 (42%)
Frame = -2
Query: 274 RHNAAGLQERKLAFSATVCILALQCRRNACPSVGHSSSDQFEALQSPKSYVSCP 113
R + L+E L + T C+ R+ + S + + ++ P +V CP
Sbjct: 118 RQQLSELKELDLPYPITTCLNDDTTTRSNNQVIQSSCGNNLQRIEEPDDFVECP 171
>SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual
Length = 426
Score = 25.8 bits (54), Expect = 6.3
Identities = 8/40 (20%), Positives = 22/40 (55%)
Frame = +2
Query: 536 CVFL*QLAMWT*LLMSLLRMCIFPSTSLCHCSRNTGRMSD 655
C FL ++ + + + +C+F T++ + +N R+++
Sbjct: 37 CTFLLSTILYLGIAVIMSHLCVFDDTAMLYLRQNRSRLAE 76
>SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 693
Score = 25.8 bits (54), Expect = 6.3
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -3
Query: 501 DFINLLRHGLLVGEKTREFTSFVQTGTQQTGNLLDQ 394
D L RH L + + F + Q GT+ NL DQ
Sbjct: 424 DLFRLFRHSNLSTSREQIFQNLEQLGTRVIKNLTDQ 459
>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 25.8 bits (54), Expect = 6.3
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = -3
Query: 594 ILSKLIRSHVHMANCYRKTQHLLHLELNGSLD-FIN-LLRHGLLVGEKTREFTSFVQ 430
+L K++ + ++C+++ +HL+H+ L F N L+ L+ F FVQ
Sbjct: 1047 VLMKVVGVFANYSDCFQRNRHLVHMVLLCCTHVFYNQTLKPATLIDSALDVFLCFVQ 1103
>SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 469
Score = 25.4 bits (53), Expect = 8.3
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +3
Query: 429 FEQSW*I-PWSSLPPGVHDAED**SQGNH*VPNEEGVV 539
F + W I P+ SLP G H +E PN+EG V
Sbjct: 36 FPKEWSILPFLSLPDGAHSSEKDFVYFTLPFPNDEGTV 73
>SPCC1739.04c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 288
Score = 25.4 bits (53), Expect = 8.3
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +1
Query: 46 KMSSKVSRDTLYECVNAVLQSSKDKKRNFLETV 144
K K DT+ E A LQSS DK NF +T+
Sbjct: 215 KRPDKSPFDTMTE---ATLQSSSDKSENFTKTL 244
>SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|chr
2|||Manual
Length = 812
Score = 25.4 bits (53), Expect = 8.3
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = -3
Query: 363 FGQFLDKLFVLIQFFQSLSIHTWHIQGFSLVTML 262
+G+F+ +LF LIQ + + W + + VT++
Sbjct: 385 YGEFVMRLFFLIQKLRKKYLSRWGVLDAAFVTVI 418
>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 809
Score = 25.4 bits (53), Expect = 8.3
Identities = 9/19 (47%), Positives = 16/19 (84%)
Frame = +1
Query: 88 VNAVLQSSKDKKRNFLETV 144
+NA+L+ SK+KK N +E++
Sbjct: 370 INALLERSKEKKANVIESL 388
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,100,420
Number of Sequences: 5004
Number of extensions: 64457
Number of successful extensions: 202
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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