Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9g16
         (436 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24C9.03 |mvd1||diphosphomevalonate decarboxylase |Schizosacc...    25   5.0  
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    24   8.8  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    24   8.8  

>SPAC24C9.03 |mvd1||diphosphomevalonate decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 393

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 16  SRVASMSGGIACPRVF*CYFAWD 84
           SR+A    G AC  +F  Y AW+
Sbjct: 149 SRIARQGSGSACRSLFGGYVAWE 171


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
           Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 10/48 (20%), Positives = 24/48 (50%)
 Frame = -1

Query: 274 KFMW*IPVCILLTSLIALRIKL*NQGKKKITNIFTPS*LVTHRHRISQ 131
           +F W + +C L TS + +     +     + N+  PS +V ++  +++
Sbjct: 287 EFSWPLELCFLETSALRMNDDSLSSNLTDLNNLVLPSNVVNNKKELTE 334


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 11/43 (25%), Positives = 20/43 (46%)
 Frame = -1

Query: 160  LVTHRHRISQHRLSHVADPESFVK*RPKQSNIRKHADTRYRLT 32
            +  H HR     L ++ + E F+   P Q+   + +   YR+T
Sbjct: 1478 IFVHWHRAYYSHLDYLTEVEYFIMGNPNQNACGEESYWYYRIT 1520


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,596,624
Number of Sequences: 5004
Number of extensions: 29234
Number of successful extensions: 49
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)