Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9g08
         (692 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.09c |||SUR7 family protein|Schizosaccharomyces pombe|c...    27   2.6  
SPCC1906.01 |mpg1||mannose-1-phosphate guanyltransferase Mpg1|Sc...    27   3.4  
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    27   3.4  
SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase |Schizo...    27   3.4  
SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1 ...    26   4.5  
SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces po...    26   5.9  
SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyce...    25   7.9  

>SPAC15A10.09c |||SUR7 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 288

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 5/96 (5%)
 Frame = +3

Query: 180 NTPLPSAIFFFLILIRKEINTNTIPYNCLRVYLAYYVVIILR----ACLRMPMIDVLIFL 347
           +TP PS  F  L ++   IN  T   + + + L   V + L+    AC  M  + +L F+
Sbjct: 133 STPSPSYYFNPLTMLETSINNAT--GSQINITLPSEVDLGLKVLKGACYAMRAMYILGFI 190

Query: 348 FYLTNAFFTALTVIILITFDIPILGPK-CDLNAFFA 452
           F+       ALT++ ++   +P  GP   ++ +FFA
Sbjct: 191 FF-------ALTIVSIVISCLPFFGPLFLNVFSFFA 219


>SPCC1906.01 |mpg1||mannose-1-phosphate guanyltransferase
           Mpg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 363

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 13/49 (26%), Positives = 27/49 (55%)
 Frame = -2

Query: 466 TISRRAKNAFKSHFGPNIGMSNVIKIITVSAVKKAFVR*NKNIKTSIIG 320
           TI +  K       GPN+ + + +++   + +K + VR +  +K+SI+G
Sbjct: 263 TIGKNCKIGPNVVIGPNVTIGDGVRLQRCAILKSSRVRDHAWVKSSIVG 311


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
            Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 306  ACLRMPMIDVLIFLFYLTNAFFTAL 380
            ACL +PM+D  +  F LT A    L
Sbjct: 1686 ACLNLPMVDAHVKAFILTQAHMARL 1710


>SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = +3

Query: 186 PLPSAIFFFLILIRKEINTNTIPYNCLRVYLAYYVVIILRACLRMPMIDV 335
           P PS+  F  +  R+EI    +  N L   +  +    L+ C R+  ID+
Sbjct: 357 PFPSSEVFRCLATRQEILKGMLGANILGFQIPEFAYHFLQTCSRLVNIDI 406


>SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 581

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 387 IILITFDIPILGPKCDLNAFF 449
           IIL+ FD P+ GP   L ++F
Sbjct: 179 IILVIFDDPVYGPSSFLTSYF 199


>SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +3

Query: 255 YNCLRVYLA--YYVVIILRACLRMPMIDVLIFLF 350
           YNC R+YL   Y  + +   C+ +  I  +I+LF
Sbjct: 283 YNCARLYLGVDYGDIAVANICMLVFSIVTIIYLF 316


>SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 550

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 225 RKEINTNTIPYNCLRVYL 278
           +K   T+ +PYNC RV+L
Sbjct: 297 KKNRYTDIVPYNCTRVHL 314


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,477,372
Number of Sequences: 5004
Number of extensions: 50163
Number of successful extensions: 126
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)