Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9g08
         (692 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705404-1|AAU12513.1|  406|Anopheles gambiae nicotinic acetylch...    26   1.3  
AY135184-1|AAN17505.1| 1009|Anopheles gambiae laccase 1 protein.       23   9.1  

>AY705404-1|AAU12513.1|  406|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 9 protein.
          Length = 406

 Score = 25.8 bits (54), Expect = 1.3
 Identities = 17/69 (24%), Positives = 31/69 (44%)
 Frame = +3

Query: 189 LPSAIFFFLILIRKEINTNTIPYNCLRVYLAYYVVIILRACLRMPMIDVLIFLFYLTNAF 368
           L  ++F+  +   + I TN I    + +YL Y+   +       P+I +      L  AF
Sbjct: 260 LALSVFWLPLDAGERIITNGILALMVTIYLVYFAQQLPAISGHTPLIVIFFSNTLLLTAF 319

Query: 369 FTALTVIIL 395
            T + VI++
Sbjct: 320 STIICVIVM 328


>AY135184-1|AAN17505.1| 1009|Anopheles gambiae laccase 1 protein.
          Length = 1009

 Score = 23.0 bits (47), Expect = 9.1
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 648 KQKCKPMCVLLVCEFN 601
           +Q C P CV   C+FN
Sbjct: 181 EQHCCPQCVQSQCKFN 196


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 622,644
Number of Sequences: 2352
Number of extensions: 11416
Number of successful extensions: 14
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 70250040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)