Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc9g08
(692 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z92782-12|CAH60765.1| 328|Caenorhabditis elegans Hypothetical p... 30 1.8
AC024808-1|AAK29927.1| 309|Caenorhabditis elegans Hypothetical ... 29 2.4
Z70210-9|CAE17897.1| 403|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z82278-4|CAB05257.2| 487|Caenorhabditis elegans Hypothetical pr... 29 4.2
Z81541-6|CAB04413.2| 326|Caenorhabditis elegans Hypothetical pr... 28 5.5
AL031633-16|CAA21028.1| 374|Caenorhabditis elegans Hypothetical... 28 5.5
Z82276-6|CAJ15166.1| 305|Caenorhabditis elegans Hypothetical pr... 27 9.6
AL132952-25|CAB63388.1| 513|Caenorhabditis elegans Hypothetical... 27 9.6
AL132846-9|CAB63368.1| 513|Caenorhabditis elegans Hypothetical ... 27 9.6
AF067607-1|AAY86220.1| 342|Caenorhabditis elegans Hypothetical ... 27 9.6
>Z92782-12|CAH60765.1| 328|Caenorhabditis elegans Hypothetical
protein F14F8.13 protein.
Length = 328
Score = 29.9 bits (64), Expect = 1.8
Identities = 19/62 (30%), Positives = 30/62 (48%)
Frame = +3
Query: 207 FFLILIRKEINTNTIPYNCLRVYLAYYVVIILRACLRMPMIDVLIFLFYLTNAFFTALTV 386
F I I +IN N ++ +YL Y+ I L +I V IF++ T + T + +
Sbjct: 207 FIYIPIMIDINKNQHLHSQQHIYLQNYIFIQSFLVLFFKLIPVPIFIWSKTTSILTEMAM 266
Query: 387 II 392
II
Sbjct: 267 II 268
>AC024808-1|AAK29927.1| 309|Caenorhabditis elegans Hypothetical
protein Y53G8AM.4 protein.
Length = 309
Score = 29.5 bits (63), Expect = 2.4
Identities = 22/113 (19%), Positives = 45/113 (39%), Gaps = 3/113 (2%)
Frame = +3
Query: 198 AIFFFLILIRKEINTNTIPYNCLRVYLAYYVVIILRACLR---MPMIDVLIFLFYLTNAF 368
A F+++ + ++ + + C VY+ Y RA R +P+++ L F+ L
Sbjct: 104 ASIFYILFVALNCVSSILQFGCFHVYITSYKYHKYRAFFRGWFVPILNCLNFVLALIFLI 163
Query: 369 FTALTVIILITFDIPILGPKCDLNAFFARRLIVSSNYFKDCTFIIQFLRKGLN 527
VI + I + F +++ + FK + +F K +N
Sbjct: 164 NLNFNVISFYMVNSLIFYLAITFSLLFFKKIFYAWKRFKQGSLASEFFNKYMN 216
>Z70210-9|CAE17897.1| 403|Caenorhabditis elegans Hypothetical
protein K08H2.9 protein.
Length = 403
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = +2
Query: 518 RPKRVILFWNNLIIAFVCLYFFYFSRNRLNSQT 616
RP FW L I +CLY F FS N +T
Sbjct: 3 RPHARTRFWIFLSIFAICLYIFGFSERNYNLKT 35
>Z82278-4|CAB05257.2| 487|Caenorhabditis elegans Hypothetical
protein M162.5 protein.
Length = 487
Score = 28.7 bits (61), Expect = 4.2
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = +3
Query: 339 IFLFYLTNAFFTALTVIILITFDIPILGPKCDLNAFFARRLIVSSNY 479
I + L FF A + L TF IPI+ P D N F R + +Y
Sbjct: 111 ISTYGLRKVFFAAGMLTSLTTFLIPIVAP-MDFNLFLLMRFLQGMSY 156
>Z81541-6|CAB04413.2| 326|Caenorhabditis elegans Hypothetical
protein F48F5.4 protein.
Length = 326
Score = 28.3 bits (60), Expect = 5.5
Identities = 20/52 (38%), Positives = 26/52 (50%)
Frame = +3
Query: 372 TALTVIILITFDIPILGPKCDLNAFFARRLIVSSNYFKDCTFIIQFLRKGLN 527
TAL +I TF PI+G A + SSN K +++FL KGLN
Sbjct: 190 TAL-FLIAATFYYPIVGSYWRYQAMKILKTHSSSNTSKGTLVLLRFLIKGLN 240
>AL031633-16|CAA21028.1| 374|Caenorhabditis elegans Hypothetical
protein Y39A1A.16 protein.
Length = 374
Score = 28.3 bits (60), Expect = 5.5
Identities = 16/65 (24%), Positives = 34/65 (52%)
Frame = -2
Query: 448 KNAFKSHFGPNIGMSNVIKIITVSAVKKAFVR*NKNIKTSIIGIRRHARKIMTT*YARYT 269
KN+FK P + ++NVI + + +V K + +K ++ +I RR K++ + Y
Sbjct: 17 KNSFKILNLPLVALTNVINQLDIQSVSK-LSKTSKKMRINIKNARRKVHKLIIDNHFEYH 75
Query: 268 LKQLY 254
+ + +
Sbjct: 76 IDKFH 80
>Z82276-6|CAJ15166.1| 305|Caenorhabditis elegans Hypothetical
protein K03D3.12 protein.
Length = 305
Score = 27.5 bits (58), Expect = 9.6
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = +3
Query: 264 LRVYLAYYVVIILRACLRMPMIDVLIFLFYLTNAFFTALTVIILITFDIPIL 419
+R+Y Y+ I L A + M + F F L N + VII+ FDI +L
Sbjct: 69 VRIYS--YLFIPLTASVYMTSVSESGFFFKLLNFLIGCVLVIIVQAFDIVVL 118
>AL132952-25|CAB63388.1| 513|Caenorhabditis elegans Hypothetical
protein Y51H4A.25a protein.
Length = 513
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +2
Query: 521 PKRVILFWNNLIIAFVCLYFFYFSRNRLN 607
PK ++LF+ + +I CL FY SR +LN
Sbjct: 47 PKYLLLFFGSTVI---CLCIFYISRPQLN 72
>AL132846-9|CAB63368.1| 513|Caenorhabditis elegans Hypothetical
protein Y51H4A.25a protein.
Length = 513
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +2
Query: 521 PKRVILFWNNLIIAFVCLYFFYFSRNRLN 607
PK ++LF+ + +I CL FY SR +LN
Sbjct: 47 PKYLLLFFGSTVI---CLCIFYISRPQLN 72
>AF067607-1|AAY86220.1| 342|Caenorhabditis elegans Hypothetical
protein C18H7.10 protein.
Length = 342
Score = 27.5 bits (58), Expect = 9.6
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Frame = +2
Query: 479 F*RLHFYNSV----SP*RPKRVILFWNNLIIAFVCLYFFYFSRNRLNSQT 616
F R +FY +V SP P R + ++I+ + + FYF+R L+ Q+
Sbjct: 61 FLREYFYFAVLDANSPKYPDRFHVDMYDIIVPLITSFLFYFARKNLSRQS 110
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,641,009
Number of Sequences: 27780
Number of extensions: 280162
Number of successful extensions: 770
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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