Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9g07
         (636 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46381-2|CAA86515.1|  202|Caenorhabditis elegans Hypothetical pr...   232   1e-61
U31528-1|AAA74904.1|  202|Caenorhabditis elegans 60S ribosomal p...   232   1e-61
AF038614-7|AAB92060.2|  664|Caenorhabditis elegans Hypothetical ...    32   0.30 
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    31   0.91 
AF077531-4|AAC64611.1|  437|Caenorhabditis elegans Hypothetical ...    30   1.6  
U70857-6|AAD31051.1|  189|Caenorhabditis elegans Hypothetical pr...    29   2.1  
U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical pr...    28   6.4  
U64848-10|AAB04888.1|  168|Caenorhabditis elegans Hypothetical p...    27   8.5  

>Z46381-2|CAA86515.1|  202|Caenorhabditis elegans Hypothetical
           protein M01F1.2 protein.
          Length = 202

 Score =  232 bits (568), Expect = 1e-61
 Identities = 108/202 (53%), Positives = 140/202 (69%)
 Frame = +2

Query: 29  GFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRK 208
           G SN+AI+IDG+ HLLGRLA+++AK LL+G+KVVV+R E+I ISGNF R+KLK MSFLRK
Sbjct: 2   GLSNRAIIIDGKNHLLGRLASIVAKKLLQGDKVVVLRAEEIVISGNFHRSKLKYMSFLRK 61

Query: 209 RCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALGRLRTYDGCPPPFDNXXXXXX 388
           RCN+NPARG FH+RAP KI W+TVRGM+PHKT RG  AL  LR Y+G P  +        
Sbjct: 62  RCNINPARGAFHYRAPGKIFWRTVRGMLPHKTNRGNEALKNLRAYEGVPAKYQK-TKSLH 120

Query: 389 XXXXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRITKD 568
                 F L+P R +C VGRLSHE+GW+++DVV KLE KRK K       +KK+ ++   
Sbjct: 121 APSASRFRLQPRRKFCVVGRLSHEVGWQFQDVVAKLEAKRKVKGAAYFEQKKKMDKLAVQ 180

Query: 569 AGEKVSKATTPFTTIIQSYGYN 634
           A +  +     +  II++ GYN
Sbjct: 181 AKKNAAPKIAQYQKIIEALGYN 202


>U31528-1|AAA74904.1|  202|Caenorhabditis elegans 60S ribosomal
           protein L13A protein.
          Length = 202

 Score =  232 bits (568), Expect = 1e-61
 Identities = 108/202 (53%), Positives = 140/202 (69%)
 Frame = +2

Query: 29  GFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRK 208
           G SN+AI+IDG+ HLLGRLA+++AK LL+G+KVVV+R E+I ISGNF R+KLK MSFLRK
Sbjct: 2   GLSNRAIIIDGKNHLLGRLASIVAKKLLQGDKVVVLRAEEIVISGNFHRSKLKYMSFLRK 61

Query: 209 RCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALGRLRTYDGCPPPFDNXXXXXX 388
           RCN+NPARG FH+RAP KI W+TVRGM+PHKT RG  AL  LR Y+G P  +        
Sbjct: 62  RCNINPARGAFHYRAPGKIFWRTVRGMLPHKTNRGNEALKNLRAYEGVPAKYQK-TKSLH 120

Query: 389 XXXXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRITKD 568
                 F L+P R +C VGRLSHE+GW+++DVV KLE KRK K       +KK+ ++   
Sbjct: 121 APSASRFRLQPRRKFCVVGRLSHEVGWQFQDVVAKLEAKRKVKGAAYFEQKKKMDKLAVQ 180

Query: 569 AGEKVSKATTPFTTIIQSYGYN 634
           A +  +     +  II++ GYN
Sbjct: 181 AKKNAAPKIAQYQKIIEALGYN 202


>AF038614-7|AAB92060.2|  664|Caenorhabditis elegans Hypothetical
           protein F15E6.9 protein.
          Length = 664

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
 Frame = +2

Query: 428 NYCHVGRLS--HEIGWKYRDVVRKLEDKRKGKAVK-RVAYEKKLKRITKDAGEKV 583
           +YC  G+ S  H I WKYRD V  ++ K K  A++ R A E K   I  D  +KV
Sbjct: 284 DYC-TGKTSILHRIQWKYRDAV-IVQAKEKMSAIELRRAIEAKTNVILHDVEQKV 336


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 30.7 bits (66), Expect = 0.91
 Identities = 16/56 (28%), Positives = 20/56 (35%)
 Frame = -2

Query: 482 HHGISIQFHGTVCLHDSNYGQVSDRRHVEQQALQHVDGYQREEGTHHMYVASQEHS 315
           HH      H     H   +G V  R H E     H   +  E GTHH +     H+
Sbjct: 381 HHEHKEGEHHEHAAHHDEHG-VHHRHHGEHHGTHHSPAHHGEHGTHHGHHGEHHHA 435



 Score = 29.5 bits (63), Expect = 2.1
 Identities = 19/65 (29%), Positives = 25/65 (38%), Gaps = 2/65 (3%)
 Frame = -2

Query: 494 AYEQHHGISIQFHGTVCLHDS--NYGQVSDRRHVEQQALQHVDGYQREEGTHHMYVASQE 321
           A+  HHG     HG    H S  ++G   +  H       H  G+    G HH +  S  
Sbjct: 537 AHHGHHGEHGTHHGHHGSHHSPAHHGHHGEHHHAPAHHGHH--GHHGSHGVHHGHHESHG 594

Query: 320 HSCHA 306
           H  HA
Sbjct: 595 HGHHA 599


>AF077531-4|AAC64611.1|  437|Caenorhabditis elegans Hypothetical
           protein F13C5.1 protein.
          Length = 437

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -2

Query: 536 RQLS*QPCPSSCLQAYEQHHGISIQFHGTVCLHDSNY 426
           R+ S   C S  L  +E HHGI +   G + L D++Y
Sbjct: 322 RKRSSAVCSSGSLTHFESHHGIKLLTIGVLPLDDNSY 358


>U70857-6|AAD31051.1|  189|Caenorhabditis elegans Hypothetical
           protein C10G8.3 protein.
          Length = 189

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 518 PCPSSCLQAYEQHHGISIQFHGTVCLHD 435
           PCP       E+ HGI++Q  G  CLH+
Sbjct: 143 PCPIGQTIVREKIHGITVQLLGKRCLHN 170


>U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical protein
            F42C5.10 protein.
          Length = 1292

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 12/44 (27%), Positives = 18/44 (40%)
 Frame = -2

Query: 440  HDSNYGQVSDRRHVEQQALQHVDGYQREEGTHHMYVASQEHSCH 309
            +D+ + Q     H      +HV  Y ++E  H    A  EH  H
Sbjct: 940  YDTVHVQHHHHHHYHTDGSEHVHHYHQDENAHQHSTAENEHIHH 983


>U64848-10|AAB04888.1|  168|Caenorhabditis elegans Hypothetical
           protein C50E3.2 protein.
          Length = 168

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = -3

Query: 493 LTNNITVFPSNFMGQSAYMTVITARFQTE 407
           L NNI VFPSN + +++ MT+   R +T+
Sbjct: 27  LENNILVFPSN-ISEASGMTLFHGRIETK 54


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,336,940
Number of Sequences: 27780
Number of extensions: 327631
Number of successful extensions: 923
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 921
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)