Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9f15
         (717 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    26   0.35 
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    24   1.1  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    23   3.3  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   7.6  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   7.6  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 25.8 bits (54), Expect = 0.35
 Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 1/98 (1%)
 Frame = +3

Query: 426 SMIENCKTKEEVVSLSKRGHEIFRRIEQSRKPYIAAIQGSCLGGGLETALACKY-RIAVK 602
           S+ +N   K  V  + KR    +R+  +  K Y+A + G  +    E  L+ +  + A  
Sbjct: 219 SLYQNATRK--VCGVWKRIPHDYRKRFRMEKIYVALVWG--VKDQAEFTLSGQVMKYAAL 274

Query: 603 DSKTGFGLPEVMLGLLPGGGGTQRLPALTSIPTTLDLA 716
            ++    L E  +G + G GGT  +   TS+ T++ LA
Sbjct: 275 ATENFSSLLEPAVGTMTGAGGTAIVSISTSVSTSVYLA 312


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 667  VPPPPGKSPNMTSGSPNPVLESF 599
            VPPP G S   ++GS +P +  F
Sbjct: 1111 VPPPSGSSGPGSTGSKSPPVAGF 1133


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -3

Query: 658 PPGKSPNMTSGSPNPVLESFTAMRYL 581
           P G +PN +S SP P     +  ++L
Sbjct: 60  PSGNTPNKSSTSPYPPNHPLSGSKHL 85


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -3

Query: 667 VPPPPGKSPNMTSGSPNPVL 608
           +PP PG SP+    S +P +
Sbjct: 230 IPPHPGLSPHPPHLSSHPAI 249


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -3

Query: 667 VPPPPGKSPNMTSGSPNPVL 608
           +PP PG SP+    S +P +
Sbjct: 122 IPPHPGLSPHPPHLSSHPAI 141


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,169
Number of Sequences: 336
Number of extensions: 3518
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19051215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)