Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9f15
         (717 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    29   0.044
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    23   3.8  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    22   5.0  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   8.8  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    21   8.8  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    21   8.8  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   8.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   8.8  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 29.1 bits (62), Expect = 0.044
 Identities = 13/61 (21%), Positives = 34/61 (55%)
 Frame = +3

Query: 258  VYVVTLDSPNVKVNSLNTQVMEEVSNIVNEIETNSGIEAAVIISGKPGCFIAGADISMIE 437
            V + +L + +  +NS+  +  + ++++  +I TN+  + A  I GKP   +  +  S+++
Sbjct: 854  VPITSLPASSTSINSITVE-KDVINDVKTQITTNTPAKKATNIGGKPVAVVKSSAQSLLQ 912

Query: 438  N 440
            +
Sbjct: 913  S 913


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +2

Query: 431 DRKLQNKGRSCQSV*KRT*NIQKNRTITETVYCRNTRQL 547
           DRK + K +  + +   + N   N    + +YC N R+L
Sbjct: 69  DRKEREKSKEHKIISSLSNNYNYNNNNYKKLYCNNYRKL 107


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = -1

Query: 621 QILFWSLSQQCDIYMQEQSLIHLLDSCLVLRQYTVSVIV 505
           Q L +  +Q+ D Y      +++L  CL     T++ I+
Sbjct: 289 QRLLYVYAQESDYYPDLNEWLYILSGCLYYFSTTINPIL 327


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 312 QVMEEVSNIVNEIETNSGIEAAVIISGKPG 401
           ++ +EVS+ + +I  N+   A V ISG  G
Sbjct: 169 EIKKEVSSYIKKIGYNTASVAFVPISGWHG 198


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = +2

Query: 431 DRKLQNKGRSCQSV*KRT*NIQKNRTITETVYCRNTRQL 547
           DRK + K +  + +   + N   N    + +YC N ++L
Sbjct: 69  DRKEREKSKEHKIISSLSNNYNYNNNNYKKLYCNNYKKL 107


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = +2

Query: 431 DRKLQNKGRSCQSV*KRT*NIQKNRTITETVYCRNTRQL 547
           DRK + K +  + +   + N   N    + +YC N ++L
Sbjct: 69  DRKEREKSKEHKIISSLSNNYNYNNNNYKKLYCNNYKKL 107


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +3

Query: 153 KILRSRKELFIS 188
           ++LR RKELFI+
Sbjct: 409 RLLRKRKELFIA 420


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +3

Query: 153 KILRSRKELFIS 188
           ++LR RKELFI+
Sbjct: 462 RLLRKRKELFIA 473


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,251
Number of Sequences: 438
Number of extensions: 4103
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)