Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9f12
         (688 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9795| Best HMM Match : FF (HMM E-Value=2.3e-33)                    114   7e-26
SB_8802| Best HMM Match : WW (HMM E-Value=3.2e-31)                     52   6e-07
SB_20015| Best HMM Match : No HMM Matches (HMM E-Value=.)              44   1e-04
SB_17981| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   6e-04
SB_13740| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.010
SB_29018| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.50 
SB_40639| Best HMM Match : CAP_GLY (HMM E-Value=0)                     29   3.5  
SB_16518| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_16212| Best HMM Match : Apyrase (HMM E-Value=0)                     28   8.1  
SB_46132| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  

>SB_9795| Best HMM Match : FF (HMM E-Value=2.3e-33)
          Length = 693

 Score =  114 bits (274), Expect = 7e-26
 Identities = 49/91 (53%), Positives = 64/91 (70%), Gaps = 1/91 (1%)
 Frame = +3

Query: 414 KPELNA-PAPDVAPSANQSSPWSEHKAPDGRTYYYNSVTKQSLWEKPDDLKTSAEKLLSA 590
           KPE    P P       + +PW+EHKAPDGRTY+YN+ +K S W+KPD+LKT +E +L +
Sbjct: 150 KPEEEKKPKPKKKKVPKKKTPWTEHKAPDGRTYFYNNDSKVSTWQKPDELKTPSEIILDS 209

Query: 591 CVWKEYTTNTGRLYYHNIETKESSWVVPKEL 683
             WKE+  ++GR+YYHN ETKES W  PKEL
Sbjct: 210 FPWKEHKADSGRVYYHNTETKESIWTEPKEL 240



 Score = 52.8 bits (121), Expect = 3e-07
 Identities = 20/39 (51%), Positives = 27/39 (69%)
 Frame = +3

Query: 465 SSPWSEHKAPDGRTYYYNSVTKQSLWEKPDDLKTSAEKL 581
           S PW EHKA  GR YY+N+ TK+S+W +P +L    EK+
Sbjct: 209 SFPWKEHKADSGRVYYHNTETKESIWTEPKELTELKEKI 247



 Score = 35.9 bits (79), Expect = 0.031
 Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 6/98 (6%)
 Frame = +3

Query: 411 FKP-ELNAPAPDVAPSANQ--SSPWSEHKAPDGRTYYYNSVT--KQSLWEKPDDLKTSAE 575
           F+P  ++A AP V     Q  SSP    + P   +   +SV   +QS  E+    K   +
Sbjct: 103 FQPMPVSATAPLVTQGLTQATSSPVVAARTPSQDSDMTSSVQTPEQSKPEEEKKPKPKKK 162

Query: 576 KL-LSACVWKEYTTNTGRLYYHNIETKESSWVVPKELQ 686
           K+      W E+    GR Y++N ++K S+W  P EL+
Sbjct: 163 KVPKKKTPWTEHKAPDGRTYFYNNDSKVSTWQKPDELK 200


>SB_8802| Best HMM Match : WW (HMM E-Value=3.2e-31)
          Length = 662

 Score = 51.6 bits (118), Expect = 6e-07
 Identities = 19/34 (55%), Positives = 26/34 (76%)
 Frame = +3

Query: 474 WSEHKAPDGRTYYYNSVTKQSLWEKPDDLKTSAE 575
           W EHK  DG+TYYYN+ T++S WEKP +L T ++
Sbjct: 87  WLEHKTSDGKTYYYNARTRESAWEKPKNLVTPSK 120



 Score = 51.6 bits (118), Expect = 6e-07
 Identities = 19/40 (47%), Positives = 27/40 (67%)
 Frame = +3

Query: 462 QSSPWSEHKAPDGRTYYYNSVTKQSLWEKPDDLKTSAEKL 581
           + S WSEH+  DGR Y+YNS T QS WE+P ++  S + +
Sbjct: 415 KQSEWSEHRTSDGRVYFYNSRTMQSTWERPKEMDQSQQPM 454



 Score = 40.7 bits (91), Expect = 0.001
 Identities = 14/30 (46%), Positives = 21/30 (70%)
 Frame = +3

Query: 594 VWKEYTTNTGRLYYHNIETKESSWVVPKEL 683
           +W E+ T+ G+ YY+N  T+ES+W  PK L
Sbjct: 86  IWLEHKTSDGKTYYYNARTRESAWEKPKNL 115



 Score = 38.7 bits (86), Expect = 0.004
 Identities = 13/29 (44%), Positives = 21/29 (72%)
 Frame = +3

Query: 597 WKEYTTNTGRLYYHNIETKESSWVVPKEL 683
           W E+ T+ GR+Y++N  T +S+W  PKE+
Sbjct: 419 WSEHRTSDGRVYFYNSRTMQSTWERPKEM 447



 Score = 33.9 bits (74), Expect = 0.12
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +3

Query: 444 VAPSANQSSPWSEHKAPDGRTYYYNSVTKQSLWEKPDDLK 563
           VA      + W       G+ +++N  T+ S+WEKP++LK
Sbjct: 517 VASELVPGTTWCVVWTGTGKAFFFNPATRLSVWEKPEELK 556



 Score = 33.1 bits (72), Expect = 0.22
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +3

Query: 543 EKPDDLKTSAEKLLSACVWKEYTTNTGRLYYHNIETKESSWVVPKELQ 686
           ++ D  K  A +L+    W    T TG+ ++ N  T+ S W  P+EL+
Sbjct: 509 QEADRSKPVASELVPGTTWCVVWTGTGKAFFFNPATRLSVWEKPEELK 556


>SB_20015| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 593

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 4/90 (4%)
 Frame = +3

Query: 417 PELNAPAPDVAPSANQSSP----WSEHKAPDGRTYYYNSVTKQSLWEKPDDLKTSAEKLL 584
           P    P P   P      P    W +   P GR YY +  ++ + WE+P  L        
Sbjct: 364 PPSRPPPPSARPLTGNEEPLPPGWEQRVDPHGRIYYVDHNSRTTAWERPQPLPHG----- 418

Query: 585 SACVWKEYTTNTGRLYYHNIETKESSWVVP 674
               W+  T + GR YY +  T+ ++W  P
Sbjct: 419 ----WERRTDSRGRTYYVDHNTRTTTWQRP 444



 Score = 37.9 bits (84), Expect = 0.008
 Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
 Frame = +3

Query: 441 DVAPSANQSSPWSEHKAPDGRTYYYNSVTKQSLWEKPDDLKT-SAEKLLSACVWKEYTTN 617
           D  P     + W +    +GR Y+ N  T+ + WE P    T SA+K L    W+   TN
Sbjct: 485 DNGPLGPLPAGWEKRVETNGRVYFVNHNTRTTQWEDPRTQTTASADKPLPQ-GWEMRYTN 543

Query: 618 TGRLYYHNIETKESSWVVPK 677
            G  Y+ +  T+ +++  P+
Sbjct: 544 EGIPYFVDHNTRTTTFTDPR 563


>SB_17981| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1303

 Score = 41.5 bits (93), Expect = 6e-04
 Identities = 27/83 (32%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
 Frame = +3

Query: 435 APDVAPSANQSSPWSEHKAPDGRT-YYYNSVTKQSLWEKPDDLKTSAEKLLSACVWKEYT 611
           AP  A    +   W E   P  +   Y N  T Q LWE P  +K   +K      W+ Y 
Sbjct: 407 APKPATIMAEKPEWVEIIEPRTKEPMYANLKTGQCLWEPPGGVKV--KKADETHWWELYD 464

Query: 612 TNTGRLYYHNIETKESSWVVPKE 680
             T R YY+N  T+ + W  PK+
Sbjct: 465 PKTRRYYYYNACTQTTVWHKPKD 487


>SB_13740| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 430

 Score = 37.5 bits (83), Expect = 0.010
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
 Frame = +3

Query: 417 PELNAPAPDVAPSANQSSP----WSEHKAPDGRTYYYNSVTKQSLWEKPDDLKTSAEKL 581
           P++  P+     SA Q  P    W E +  +GRT+Y +  T+ + W +P    T   +L
Sbjct: 165 PDVEEPSASARSSAEQPPPLPEGWEERQDANGRTFYIDHTTRTTTWVRPSSESTYQREL 223


>SB_29018| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1047

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +3

Query: 474 WSEHKAPDGRTYYYNSVTKQSLWEKP 551
           W     P G+ YYY+++T+++ W+ P
Sbjct: 852 WKTATDPQGKIYYYHTLTRRTQWDPP 877


>SB_40639| Best HMM Match : CAP_GLY (HMM E-Value=0)
          Length = 709

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +3

Query: 456 ANQSSPWSEHKAPD-GRTYYYNSVTKQSLWEKP 551
           AN    W   K+   GR YY+N+ T +S W+ P
Sbjct: 81  ANLPEGWIISKSRQHGRMYYFNTETAESRWQHP 113



 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +3

Query: 621 GRLYYHNIETKESSWVVP 674
           GR+YY N ET ES W  P
Sbjct: 96  GRMYYFNTETAESRWQHP 113


>SB_16518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 325

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +3

Query: 597 WKEYTTNTGRLYYHNIETKESSWVVPK 677
           W+  TT+TGR+YY N    ++++  P+
Sbjct: 35  WEVRTTDTGRVYYANTVNHQTTFTDPR 61


>SB_16212| Best HMM Match : Apyrase (HMM E-Value=0)
          Length = 372

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +1

Query: 328 IWLHYHRPWAFLPCCRLHFQYHRQDSLH 411
           IW   H+ W FLP    H  Y+ +D  H
Sbjct: 258 IWSDVHQLWFFLPRRASHEMYNEKDDEH 285


>SB_46132| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1000

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = +3

Query: 516 NSVTKQSLWEKPDDLKTSAEKLLSACVWKEYTTNTGR-LYYHNIETKESSWVVPKELQ 686
           +S T+  +  K D+  T +   L++  W  +   +G  LYY++  T E  WV+  +++
Sbjct: 191 SSKTQPGVTSKTDE-PTFSHSTLASPDWVPFLCKSGETLYYYHKTTGEKRWVLTADME 247


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,634,157
Number of Sequences: 59808
Number of extensions: 384221
Number of successful extensions: 1204
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1189
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)