Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc9f07
(698 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_4238| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 2e-07
SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0) 50 2e-06
SB_27746| Best HMM Match : MAM (HMM E-Value=1.4013e-45) 49 3e-06
SB_23934| Best HMM Match : zf-C3HC4 (HMM E-Value=1e-07) 49 3e-06
SB_40871| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 1e-05
SB_13477| Best HMM Match : Ldl_recept_a (HMM E-Value=0) 47 1e-05
SB_49946| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 3e-05
SB_39497| Best HMM Match : zf-C3HC4 (HMM E-Value=5.1e-12) 46 4e-05
SB_24514| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 4e-05
SB_48688| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-26) 45 7e-05
SB_47789| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-34) 45 7e-05
SB_30577| Best HMM Match : Ldl_recept_a (HMM E-Value=2.8e-25) 45 7e-05
SB_50311| Best HMM Match : Ldl_recept_a (HMM E-Value=3.4e-20) 44 1e-04
SB_6273| Best HMM Match : MAM (HMM E-Value=0) 44 1e-04
SB_35350| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 5e-04
SB_53569| Best HMM Match : EGF_CA (HMM E-Value=0) 41 8e-04
SB_43556| Best HMM Match : Ldl_recept_a (HMM E-Value=2.7e-11) 41 8e-04
SB_698| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00037) 41 8e-04
SB_39560| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00055) 41 8e-04
SB_8478| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 8e-04
SB_23898| Best HMM Match : Ldl_recept_a (HMM E-Value=1.4013e-45) 41 0.001
SB_13199| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.001
SB_43823| Best HMM Match : MAM (HMM E-Value=0) 40 0.001
SB_32416| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0021) 40 0.002
SB_51898| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_18178| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.003
SB_33423| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-22) 40 0.003
SB_31927| Best HMM Match : Ldl_recept_a (HMM E-Value=2.3e-27) 40 0.003
SB_31087| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-32) 40 0.003
SB_17897| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-14) 40 0.003
SB_26126| Best HMM Match : Ldl_recept_b (HMM E-Value=3e-24) 39 0.004
SB_22727| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.006
SB_45709| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.008
SB_55149| Best HMM Match : Ldl_recept_a (HMM E-Value=2.6e-23) 38 0.008
SB_56441| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.010
SB_21487| Best HMM Match : MAM (HMM E-Value=0) 37 0.014
SB_35576| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.014
SB_23054| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.024
SB_2014| Best HMM Match : MAM (HMM E-Value=0) 36 0.024
SB_9476| Best HMM Match : RuvB_N (HMM E-Value=0.35) 36 0.024
SB_28040| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.042
SB_26589| Best HMM Match : DUF477 (HMM E-Value=5.2e-18) 35 0.055
SB_5319| Best HMM Match : Ldl_recept_a (HMM E-Value=7.56701e-44) 35 0.055
SB_50657| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.073
SB_29580| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-38) 34 0.096
SB_45605| Best HMM Match : MAM (HMM E-Value=2.1e-16) 34 0.13
SB_20531| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.13
SB_19614| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.17
SB_10498| Best HMM Match : Ldl_recept_a (HMM E-Value=2.7e-07) 33 0.17
SB_9645| Best HMM Match : DUF101 (HMM E-Value=4.3) 33 0.22
SB_47583| Best HMM Match : SAP (HMM E-Value=8.9e-08) 33 0.22
SB_32949| Best HMM Match : SAP (HMM E-Value=1) 33 0.22
SB_53400| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.29
SB_17138| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.29
SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34) 32 0.39
SB_27553| Best HMM Match : Pyr_redox (HMM E-Value=1.1e-20) 32 0.39
SB_47409| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-17) 32 0.51
SB_55367| Best HMM Match : Granulin (HMM E-Value=0.00023) 31 0.68
SB_43575| Best HMM Match : Sina (HMM E-Value=0) 31 0.68
SB_39138| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.68
SB_21610| Best HMM Match : HSF_DNA-bind (HMM E-Value=0.32) 31 0.90
SB_43631| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_39219| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_3059| Best HMM Match : REJ (HMM E-Value=4.8e-06) 30 2.1
SB_25066| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_20965| Best HMM Match : Fz (HMM E-Value=3.1) 30 2.1
SB_4080| Best HMM Match : zf-C3HC4 (HMM E-Value=0.23) 30 2.1
SB_6618| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_18810| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_46259| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_45482| Best HMM Match : BTB (HMM E-Value=5.6e-11) 29 4.8
SB_14155| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_40225| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
SB_46226| Best HMM Match : Ion_trans (HMM E-Value=1.4013e-45) 28 8.4
SB_14351| Best HMM Match : zf-B_box (HMM E-Value=2.3e-12) 28 8.4
SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
>SB_4238| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1288
Score = 53.2 bits (122), Expect = 2e-07
Identities = 37/125 (29%), Positives = 52/125 (41%), Gaps = 6/125 (4%)
Frame = +2
Query: 269 TVCPSSMFRCPEGKCIPSLWVCNYQKDCDKGEDEFQSCRIKCPVCSKFVLPDDIECHLVM 448
T P + FRC G+CIP WVC+ DC G DE SC CS+ ++I C +
Sbjct: 625 TCNPDTQFRCTNGRCIPRRWVCDKDDDCHDGSDERNSCATM--TCSE----NEITCGNGI 678
Query: 449 CLTRPRLSYNEDVLSDSKGECVICLEELSAGD-TIARLPCL-----CIYHKGCIDQWFEV 610
C+ + + +D D E + T A C+ C + C D E+
Sbjct: 679 CVVKRWVCDQDDDCGDGTDELNCAPHTCRPNEFTCADKRCILSRWRCDGDRDCADNSDEI 738
Query: 611 NRSCP 625
N CP
Sbjct: 739 N--CP 741
Score = 38.3 bits (85), Expect = 0.006
Identities = 35/138 (25%), Positives = 52/138 (37%), Gaps = 4/138 (2%)
Frame = +2
Query: 245 DTRHLSGDTVCPSSMFRCPEGKCIPSLWVCNYQKDCDKGEDEFQSCRIKCPVCSKFVLPD 424
D R+ C + C G C+ WVC+ DC G DE C ++F D
Sbjct: 657 DERNSCATMTCSENEITCGNGICVVKRWVCDQDDDCGDGTDELNCAPHTCRP-NEFTCAD 715
Query: 425 DIECHLV--MCLTRPRLSYNEDVLS--DSKGECVICLEELSAGDTIARLPCLCIYHKGCI 592
C L C + N D ++ +S C + S G+ I + +C C+
Sbjct: 716 K-RCILSRWRCDGDRDCADNSDEINCPNSSQYCKSSEYQCSTGECIHK-SWVCDGEFDCL 773
Query: 593 DQWFEVNRSCPEHPGD*C 646
++ E N CP P C
Sbjct: 774 NKSDENN--CPTKPPSIC 789
Score = 33.5 bits (73), Expect = 0.17
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +2
Query: 269 TVCPSSMFRCPEGK-CIPSLWVCNYQKDCDKGEDEFQSCRI 388
++C F+C K CIP VC+ DC DE +C I
Sbjct: 787 SICKDGEFQCGSSKQCIPESKVCDGSVDCTNSADEPDNCFI 827
Score = 32.3 bits (70), Expect = 0.39
Identities = 25/98 (25%), Positives = 37/98 (37%), Gaps = 1/98 (1%)
Frame = +2
Query: 308 KCIPSLWVCNYQKDCDKGEDEFQSCRIKCPVCSKFVLPD-DIECHLVMCLTRPRLSYNED 484
KCI + W C+ + DC DE I CP + PD C C+ R + +D
Sbjct: 598 KCIAATWKCDGEDDCGDNSDE-----INCPKAT--CNPDTQFRCTNGRCIPRRWVCDKDD 650
Query: 485 VLSDSKGECVICLEELSAGDTIARLPCLCIYHKGCIDQ 598
D E C + + I +C+ + DQ
Sbjct: 651 DCHDGSDERNSCATMTCSENEITCGNGICVVKRWVCDQ 688
>SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
Length = 3891
Score = 49.6 bits (113), Expect = 2e-06
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +2
Query: 269 TVCPSSMFRCPEGKCIPSLWVCNYQKDC-DKGEDEFQSCRIKCP 397
T C + FRCP G+CI W+C+ DC D +++ C + CP
Sbjct: 3044 TTCTADQFRCPSGRCISRDWLCDGDNDCGDSSDEKAGECHVTCP 3087
Score = 49.2 bits (112), Expect = 3e-06
Identities = 38/140 (27%), Positives = 55/140 (39%), Gaps = 7/140 (5%)
Frame = +2
Query: 275 CPSSMFRCPEGKCIPSLWVCNYQKDCDKGEDEFQSCRIKCPVCSKFVLPDDIECHLVMCL 454
C F C G+CI + WVC+ + DC DE + + CP +F P+ C+
Sbjct: 2209 CEPGHFSCNNGRCINAKWVCDRENDCGDNSDEARCPEVTCP-AHEFTCPNG------RCV 2261
Query: 455 TRPRLSYNEDVLSDSKGE--C--VICLE-ELSAGDTIARLPC--LCIYHKGCIDQWFEVN 613
+ L ED D E C C+ ++ G +P LC C D W E
Sbjct: 2262 SYDFLCDGEDDCGDFSDELRCPPTTCVPGQVKCGSKNLCIPSSWLCDGSDDCGDGWDE-R 2320
Query: 614 RSCPEHPGD*CAV*CAQTDC 673
+ C E P + C +C
Sbjct: 2321 QDCRERPCNVSEFRCTSGEC 2340
Score = 46.8 bits (106), Expect = 2e-05
Identities = 18/41 (43%), Positives = 21/41 (51%)
Frame = +2
Query: 275 CPSSMFRCPEGKCIPSLWVCNYQKDCDKGEDEFQSCRIKCP 397
C + FRC G CI W C++Q DC G DE Q CP
Sbjct: 2457 CDVTQFRCKTGTCITREWRCDHQDDCGDGSDEQQCVNYTCP 2497
Score = 46.4 bits (105), Expect = 2e-05
Identities = 20/42 (47%), Positives = 24/42 (57%)
Frame = +2
Query: 245 DTRHLSGDTVCPSSMFRCPEGKCIPSLWVCNYQKDCDKGEDE 370
D + S T C +SMFRC G+C P WVC+ DC G DE
Sbjct: 900 DEANCSVATNCSASMFRCANGQCKPRDWVCDGFDDCGDGSDE 941
Score = 45.2 bits (102), Expect = 5e-05
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +2
Query: 275 CPSSMFRCPEGKCIPSLWVCNYQKDCDKGEDEFQSCRIKC 394
C +RC G+CI + WVC++ DC G DE Q C
Sbjct: 3168 CAKHQYRCASGRCISASWVCDHVNDCGDGSDEQQCINRTC 3207
Score = 43.6 bits (98), Expect = 2e-04
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = +2
Query: 245 DTRHLSGDTVCPSSMFRCPEGKCIPSLWVCNYQKDCDKGEDEFQSCRIKCPVCS 406
D R + C S FRC G+C+P+ W C+ DC DE C+ C+
Sbjct: 2318 DERQDCRERPCNVSEFRCTSGECVPASWRCDGDNDCTDKSDEPTDCQRSNATCT 2371
Score = 43.6 bits (98), Expect = 2e-04
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Frame = +2
Query: 245 DTRHLSGDTV-----CPSSMFRCPEGKCIPSLWVCNYQKDCDKGEDEFQSCRIKCPVCSK 409
D HL+ D C ++ F C +CI LW C+ + DC G DE SC ++
Sbjct: 2911 DNMHLANDRQTCLENCTNNDFMCDNYRCISRLWRCDGEDDCGDGSDEPDSCPVRVCKPGT 2970
Query: 410 FVLPDDIECHLVM 448
+ D+ +C V+
Sbjct: 2971 YQCADNRKCISVL 2983
Score = 43.2 bits (97), Expect = 2e-04
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2
Query: 275 CPSSMFRCPEGK-CIPSLWVCNYQKDCDKGEDEFQSCRIKCPVCS 406
CP+ RC G+ CIPS W C+ + DC+ G DE S + CS
Sbjct: 3086 CPAGQARCATGRRCIPSEWRCDGESDCEDGSDE-NSAQCTAITCS 3129
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = +2
Query: 242 VDTRHLSGDTVCPSSMFRCPEGKCIPSLWVCNYQKDCDKGEDEFQSC 382
V T+ ++ CP + F C G CIP VC+ + DC DE +C
Sbjct: 36 VFTQVVTARLTCPPTKFLCANGMCIPKSAVCDGENDCGDMSDEPSNC 82
Score = 39.9 bits (89), Expect = 0.002
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Frame = +2
Query: 266 DTVCPSSMFRCPEGKCIPSLWVCNYQKDCDKGEDEFQSCRIKCPVCSKFVLPDDIEC-HL 442
+ CP+ F CP G+C+ ++C+ + DC DE ++CP + +P ++C
Sbjct: 2245 EVTCPAHEFTCPNGRCVSYDFLCDGEDDCGDFSDE-----LRCPPTT--CVPGQVKCGSK 2297
Query: 443 VMCLTRPRLSYNEDVLSDSKGECVICLE 526
+C+ L D D E C E
Sbjct: 2298 NLCIPSSWLCDGSDDCGDGWDERQDCRE 2325
Score = 39.1 bits (87), Expect = 0.003
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +2
Query: 275 CPSSMFRCPEGKCIPSLWVCNYQKDCDKGEDEFQSCRIKCPVC 403
CP+ F+C G CI + VC+ DC G DE + C + C
Sbjct: 2496 CPNHTFKCTSGHCIANSSVCDGDTDCADGSDE-KDCDLGTSTC 2537
Score = 39.1 bits (87), Expect = 0.003
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +2
Query: 275 CPSSMFRC-PEGKCIPSLWVCNYQKDCDKGEDE 370
C + FRC + +CIP+ W C+ + DC+ G DE
Sbjct: 3128 CSAETFRCYSDRRCIPNQWKCDGESDCNDGSDE 3160
Score = 38.7 bits (86), Expect = 0.004
Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
Frame = +2
Query: 275 CPSSMFRCPEGKCIPSLWVCNYQKDCDKGEDEFQSCRIKCPVCSKFVL-PDDIECHLVMC 451
C SS F C G+C+ +VC+ DC G DE VC+ + P C+ C
Sbjct: 2168 CASSEFACESGQCVRKSFVCDGDNDCHDGSDE------SSLVCASWTCEPGHFSCNNGRC 2221
Query: 452 LTRPRLSYNEDVLSDSKGE 508
+ + E+ D+ E
Sbjct: 2222 INAKWVCDRENDCGDNSDE 2240
Score = 38.3 bits (85), Expect = 0.006
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +2
Query: 272 VC-PSSMFRCPEGKCIPSLWVCNYQKDCDKGEDE 370
+C P F+C G+CI W C+ KDC G DE
Sbjct: 86 ICDPKLEFQCANGRCINKKWRCDGMKDCADGSDE 119
Score = 37.1 bits (82), Expect = 0.014
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Frame = +2
Query: 245 DTRHLSGDTVCPSSMFRCPEGKCIPSLWVCNYQKDCDKGEDE--FQSC--RIKC 394
+ R L ++C +S FRC KCIP VC+ C DE ++SC R+ C
Sbjct: 3277 ELRLLCRYSICRNSHFRCDNNKCIPKWNVCDGVYHCTDKSDEAPYRSCPARVAC 3330
Score = 36.7 bits (81), Expect = 0.018
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = +2
Query: 275 CPSSMFRCPEGKCIPSLWVCNYQKDC--DKGEDEFQSC 382
C + F C G CI W C+ + DC + EDE+ C
Sbjct: 825 CSAGKFTCKNGHCISLRWKCDGENDCVDNSDEDEYAGC 862
Score = 36.7 bits (81), Expect = 0.018
Identities = 20/79 (25%), Positives = 31/79 (39%), Gaps = 1/79 (1%)
Frame = +2
Query: 275 CPSSMFRCPE-GKCIPSLWVCNYQKDCDKGEDEFQSCRIKCPVCSKFVLPDDIECHLVMC 451
C S + C +C+P +VC+ + DC G DE + + C C C
Sbjct: 2414 CTQSEYSCRSTSRCVPLAFVCDGENDCGDGSDESEEQNCERATCD----VTQFRCKTGTC 2469
Query: 452 LTRPRLSYNEDVLSDSKGE 508
+TR ++D D E
Sbjct: 2470 ITREWRCDHQDDCGDGSDE 2488
Score = 36.7 bits (81), Expect = 0.018
Identities = 15/41 (36%), Positives = 17/41 (41%)
Frame = +2
Query: 275 CPSSMFRCPEGKCIPSLWVCNYQKDCDKGEDEFQSCRIKCP 397
C F C +G CI W C+ DC DE S CP
Sbjct: 3207 CADGQFSCDDGLCIARAWKCDGMMDCADASDEKGSGHRWCP 3247
Score = 35.1 bits (77), Expect = 0.055
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +2
Query: 245 DTRHLSGDTVCPSSMFRCPEGK-CIPSLWVCNYQKDCDKGEDE 370
D R+ +G T C F C G+ CI W+C+ + DC DE
Sbjct: 1078 DERNCTGKT-CKPFEFACANGRHCIQRKWICDGENDCGDRSDE 1119
Score = 35.1 bits (77), Expect = 0.055
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +2
Query: 260 SGDTVCPSSMFRCPEGKCIPSLWVCNYQKDCDKGEDEFQ-SCR 385
SG CP +++C C+ W+C+ DC DE + CR
Sbjct: 3241 SGHRWCPQRLYQCINHVCVDRRWLCDDMDDCGDYSDELRLLCR 3283
Score = 33.9 bits (74), Expect = 0.13
Identities = 22/78 (28%), Positives = 33/78 (42%)
Frame = +2
Query: 275 CPSSMFRCPEGKCIPSLWVCNYQKDCDKGEDEFQSCRIKCPVCSKFVLPDDIECHLVMCL 454
C FRC +C+ VC+ DC G DE ++C + C+ D C C+
Sbjct: 3007 CAPYHFRCDNFRCVYRSRVCDGIDDCRDGSDE-RNCHV--TTCT----ADQFRCPSGRCI 3059
Query: 455 TRPRLSYNEDVLSDSKGE 508
+R L ++ DS E
Sbjct: 3060 SRDWLCDGDNDCGDSSDE 3077
Score = 33.1 bits (72), Expect = 0.22
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = +2
Query: 266 DTVCPSSMFRCPEGKCIPSLWVCNYQKDCDKGEDE 370
+ C + F C G+CI + +C+ DC DE
Sbjct: 2367 NATCTGAQFACDNGRCISTRLLCDGDNDCGDNSDE 2401
Score = 31.9 bits (69), Expect = 0.51
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +2
Query: 275 CPSSMFRCPEGKCIPSLWVCNYQKDCDKGEDEFQ 376
C F+C +C+P VC+ DC DE Q
Sbjct: 3330 CRKDQFKCLNRRCVPVRAVCDSNDDCGDISDELQ 3363
Score = 31.1 bits (67), Expect = 0.90
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +2
Query: 275 CPSSMFRCP-EGKCIPSLWVCNYQKDCDKGEDEFQSCRIKCPVCSKF 412
C S+ F+C +CIP +VC+ DC DE ++C K C F
Sbjct: 1047 CHSTEFQCETSSRCIPLRFVCDADDDCGDRSDE-RNCTGK--TCKPF 1090
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = +2
Query: 275 CPSSMFRCPEG-KCIPSLWVCNYQKDC 352
C +S FRC KCIP W C+ DC
Sbjct: 867 CRASEFRCQASRKCIPLSWRCDGDYDC 893
Score = 29.9 bits (64), Expect = 2.1
Identities = 23/80 (28%), Positives = 32/80 (40%), Gaps = 1/80 (1%)
Frame = +2
Query: 272 VCPSSMFRCPEG-KCIPSLWVCNYQKDCDKGEDEFQSCRIKCPVCSKFVLPDDIECHLVM 448
VC ++C + KCI L VC+ C G+DE +C C+ P C
Sbjct: 2965 VCKPGTYQCADNRKCISVLEVCDGIPSCPAGDDE-SNCG-SVNQCA----PYHFRCDNFR 3018
Query: 449 CLTRPRLSYNEDVLSDSKGE 508
C+ R R+ D D E
Sbjct: 3019 CVYRSRVCDGIDDCRDGSDE 3038
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Frame = +2
Query: 275 CPSSMFRCPE-GKCIPSLWVCNYQKDCDKGEDEFQSC 382
C + +RC +CI VC+ + DC DE C
Sbjct: 1127 CGNDRWRCSNTSRCIAKSQVCDGRVDCPDASDEGPGC 1163
>SB_27746| Best HMM Match : MAM (HMM E-Value=1.4013e-45)
Length = 622
Score = 49.2 bits (112), Expect = 3e-06
Identities = 21/47 (44%), Positives = 30/47 (63%)
Frame = +2
Query: 245 DTRHLSGDTVCPSSMFRCPEGKCIPSLWVCNYQKDCDKGEDEFQSCR 385
D +H S CPS+MF CP G+CIP+ +CN + DC DE ++C+
Sbjct: 213 DEKHCS----CPSNMFLCPSGECIPTTALCNNENDCSDNADE-RNCQ 254
Score = 31.1 bits (67), Expect = 0.90
Identities = 23/78 (29%), Positives = 33/78 (42%)
Frame = +2
Query: 275 CPSSMFRCPEGKCIPSLWVCNYQKDCDKGEDEFQSCRIKCPVCSKFVLPDDIECHLVMCL 454
C F C G+C+ +C+ K C G DE + C CP + F+ P C+
Sbjct: 183 CLEDEFGCENGQCVKRGLLCDGDKACLDGSDE-KHC--SCP-SNMFLCPSG------ECI 232
Query: 455 TRPRLSYNEDVLSDSKGE 508
L NE+ SD+ E
Sbjct: 233 PTTALCNNENDCSDNADE 250
>SB_23934| Best HMM Match : zf-C3HC4 (HMM E-Value=1e-07)
Length = 617
Score = 49.2 bits (112), Expect = 3e-06
Identities = 19/43 (44%), Positives = 26/43 (60%)
Frame = +2
Query: 503 GECVICLEELSAGDTIARLPCLCIYHKGCIDQWFEVNRSCPEH 631
GECVICL+E G T+ LPC +H+ CI+ W + + P H
Sbjct: 558 GECVICLDEFKPGCTLLGLPCGHSFHQHCIEVWLAGDNTAPHH 600
>SB_40871| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 279
Score = 47.6 bits (108), Expect = 1e-05
Identities = 18/37 (48%), Positives = 21/37 (56%)
Frame = +2
Query: 275 CPSSMFRCPEGKCIPSLWVCNYQKDCDKGEDEFQSCR 385
C SS FRC G+C+ WVC+ DC G DE Q R
Sbjct: 118 CSSSQFRCRNGRCVSRSWVCDKDNDCGDGSDEVQCNR 154
Score = 42.7 bits (96), Expect = 3e-04
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = +2
Query: 260 SGDTVCPSSMFRCPEGKCIPSLWVCNYQKDCDKGEDEFQSCR 385
+G C + +RC +CIP WVC+ DC G DE CR
Sbjct: 155 AGGGWCGAGRYRCDNDRCIPRNWVCDRDNDCGDGSDE-TGCR 195
>SB_13477| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
Length = 628
Score = 47.2 bits (107), Expect = 1e-05
Identities = 18/36 (50%), Positives = 21/36 (58%)
Frame = +2
Query: 275 CPSSMFRCPEGKCIPSLWVCNYQKDCDKGEDEFQSC 382
CPS+ FRC G+CIP W C+ DC DE SC
Sbjct: 10 CPSNRFRCNNGRCIPMSWRCDGDNDCGDMSDEPPSC 45
Score = 41.9 bits (94), Expect = 5e-04
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = +2
Query: 275 CPSSMFRCPEGKCIPSLWVCNYQKDCDKGEDE 370
C S F C G+CI WVC+ DC G DE
Sbjct: 50 CNSGQFSCSNGRCISRSWVCDRDNDCGDGSDE 81
Score = 35.5 bits (78), Expect = 0.042
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Frame = +2
Query: 269 TVCPSSMFRC---PEGKCIPSLWVCNYQKDC-DKGEDEFQSCR 385
T CP+ RC G CI + W+CN + DC D +++ CR
Sbjct: 190 TTCPADWVRCFYNSSGLCISTSWLCNGRVDCPDAWDEQPAQCR 232
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +2
Query: 248 TRHLSGDTVCPSSMFRCPEGKCIPSLWVCNYQKDCDKGEDEFQSC 382
TR + + C S F C G+C+ VC+ DC DE SC
Sbjct: 94 TRPWTPISSCRSWEFSCLNGRCVFYRLVCDGVDDCGDSSDE-MSC 137
>SB_49946| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 139
Score = 46.0 bits (104), Expect = 3e-05
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = +2
Query: 497 SKGECVICLEELSAGDTIARLPCLCIYHKGCIDQWFEVNRSCP 625
S C ICL + G++ ++PC ++H GCI W E SCP
Sbjct: 58 STSSCPICLGDYEKGESTKQMPCDHLFHPGCILPWLEKTNSCP 100
>SB_39497| Best HMM Match : zf-C3HC4 (HMM E-Value=5.1e-12)
Length = 558
Score = 45.6 bits (103), Expect = 4e-05
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +2
Query: 488 LSDSKGECVICLEELSAGDTIARLPCLCIYHKGCIDQWFEVNRSCP 625
+++ +CVICLE G + +PC +HK C+D W N +CP
Sbjct: 207 VTEKNPKCVICLEGFKNGQDLRIVPCRHEFHKECVDPWLLSNFTCP 252
>SB_24514| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 402
Score = 45.6 bits (103), Expect = 4e-05
Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +2
Query: 509 CVICLEELSAGDTIARLPCLCIYHKGCIDQWF-EVNRSCP 625
C ICL+E GD + LPC YH C+D W E R+CP
Sbjct: 301 CAICLDEYKEGDKLRILPCDHAYHCKCVDPWLTEGKRTCP 340
>SB_48688| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-26)
Length = 351
Score = 44.8 bits (101), Expect = 7e-05
Identities = 18/40 (45%), Positives = 24/40 (60%)
Frame = +2
Query: 275 CPSSMFRCPEGKCIPSLWVCNYQKDCDKGEDEFQSCRIKC 394
C S+ F+CP+GKC+ CN + DC G DE+ SC C
Sbjct: 74 CRSAEFKCPDGKCVHPSKFCNGESDCTDGSDEW-SCDNSC 112
Score = 33.1 bits (72), Expect = 0.22
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = +2
Query: 260 SGDTVCPSSMFRCPEGKCIPSLWVCNYQKDCDKGEDEFQSC 382
S D C SS C +G C+ CN DC G DE + C
Sbjct: 107 SCDNSC-SSRHACADGTCVTWSLTCNGVSDCQDGSDEPKLC 146
>SB_47789| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-34)
Length = 262
Score = 44.8 bits (101), Expect = 7e-05
Identities = 18/38 (47%), Positives = 21/38 (55%)
Frame = +2
Query: 257 LSGDTVCPSSMFRCPEGKCIPSLWVCNYQKDCDKGEDE 370
LSG C F+C GKCIPS W C++ DC DE
Sbjct: 184 LSG--TCAPGQFKCGNGKCIPSSWKCDHDNDCGDNSDE 219
Score = 40.3 bits (90), Expect = 0.001
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +2
Query: 269 TVCPSSMFRCPEGKCIPSLWVCNYQKDCDKGEDE 370
+ C S F+C G+CI S W C++ DC DE
Sbjct: 225 STCNPSQFKCDNGRCISSKWRCDHDNDCGDMSDE 258
>SB_30577| Best HMM Match : Ldl_recept_a (HMM E-Value=2.8e-25)
Length = 147
Score = 44.8 bits (101), Expect = 7e-05
Identities = 18/40 (45%), Positives = 24/40 (60%)
Frame = +2
Query: 275 CPSSMFRCPEGKCIPSLWVCNYQKDCDKGEDEFQSCRIKC 394
C S+ F+CP+GKC+ CN + DC G DE+ SC C
Sbjct: 74 CRSAEFKCPDGKCVHPSKFCNGESDCTDGSDEW-SCDNSC 112
Score = 33.1 bits (72), Expect = 0.22
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = +2
Query: 260 SGDTVCPSSMFRCPEGKCIPSLWVCNYQKDCDKGEDEFQSC 382
S D C SS C +G C+ CN DC G DE + C
Sbjct: 107 SCDNSC-SSRHACADGTCVTWSLTCNGVSDCQDGSDEPKLC 146
>SB_50311| Best HMM Match : Ldl_recept_a (HMM E-Value=3.4e-20)
Length = 772
Score = 44.0 bits (99), Expect = 1e-04
Identities = 18/39 (46%), Positives = 25/39 (64%)
Frame = +2
Query: 275 CPSSMFRCPEGKCIPSLWVCNYQKDCDKGEDEFQSCRIK 391
CPS+MF CP G+CI +C+ +KDC DE ++C K
Sbjct: 127 CPSNMFLCPSGECIMGTQLCDGKKDCTDNTDE-KNCAHK 164
Score = 36.7 bits (81), Expect = 0.018
Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 3/97 (3%)
Frame = +2
Query: 275 CPSSMFRCPEGKCIPSLWVCNYQKDCDKGEDEFQSCRIKCPVCSKFVLPDDIECHL--VM 448
C S F+C GKCI C+ C G DE R +CP + F+ P EC + +
Sbjct: 91 CGSGEFQCDNGKCIRKNLYCDGDFACVDGSDE---TRCECP-SNMFLCPSG-ECIMGTQL 145
Query: 449 CLTRPRLSYNEDVLSDS-KGECVICLEELSAGDTIAR 556
C + + N D + + K EC +C+ + G I R
Sbjct: 146 CDGKKDCTDNTDEKNCAHKTEC-LCVRQSFKGSVIPR 181
>SB_6273| Best HMM Match : MAM (HMM E-Value=0)
Length = 4272
Score = 44.0 bits (99), Expect = 1e-04
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = +2
Query: 275 CPSSMFRCPEGKCIPSLWVCNYQKDCDKGEDEFQ--SCRIKCPVC 403
CP +FRC +G CI C+YQ DC G DE +C + C
Sbjct: 2246 CPFGLFRCTDGSCIMQSLRCDYQNDCSDGLDEASCGTCNFEADQC 2290
Score = 44.0 bits (99), Expect = 1e-04
Identities = 17/40 (42%), Positives = 25/40 (62%)
Frame = +2
Query: 275 CPSSMFRCPEGKCIPSLWVCNYQKDCDKGEDEFQSCRIKC 394
C S RC G+CI ++ VC+++KDC G DE +C+ C
Sbjct: 2550 CNSGEHRCSNGQCINAIQVCDFKKDCSDGSDE-ATCQSTC 2588
Score = 38.7 bits (86), Expect = 0.004
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +2
Query: 275 CPSSMFRC-PEGKCIPSLWVCNYQKDCDKGEDEFQSCRIKC 394
C + F C +GKCIP VC++ DC G DE +SC C
Sbjct: 3425 CNAQQFGCVTDGKCIPLTSVCDFNVDCLDGSDE-RSCPSNC 3464
Score = 38.7 bits (86), Expect = 0.004
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = +2
Query: 272 VCPSSMFRCPEGKCIPSLWVCNYQKDCDKGEDEFQSC 382
VC S FRC G C S VC++ DC DE +SC
Sbjct: 3619 VCTRSQFRCTRGSCTSSDNVCDFSDDCGDSSDE-RSC 3654
Score = 38.3 bits (85), Expect = 0.006
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +2
Query: 275 CPSSMFRCPEGKCIPSLWVCNYQKDCDKGEDEFQS 379
C S+ FRC G CI S C+++ DC G +E S
Sbjct: 2783 CSSNQFRCDSGHCISSSSKCDFETDCCDGSEERNS 2817
Score = 37.5 bits (83), Expect = 0.010
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 275 CPSSMFRCPEGKCIPSLWVCNYQKDC 352
C + F+C G CIP ++C+YQ DC
Sbjct: 4059 CNTDEFKCSRGGCIPKSYLCDYQADC 4084
Score = 35.1 bits (77), Expect = 0.055
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +2
Query: 272 VCPSSMFRCPEGKCIPSLWVCNYQKDCDKGEDE 370
+C FRC G CI + VC++ DC DE
Sbjct: 2092 MCQYGQFRCARGSCIDTGRVCDFTDDCGDNSDE 2124
Score = 33.5 bits (73), Expect = 0.17
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Frame = +2
Query: 269 TVCPSSMFRC-PEGK--CIPSLWVCNYQKDCDKGEDEFQSCRIKCPVCS 406
+ C S+ F C EG CI S VC++ K+C G DE + C S
Sbjct: 3845 STCSSAEFNCVAEGPNACILSTQVCDFSKNCKDGSDEKNCVQPSCDFSS 3893
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 7/57 (12%)
Frame = +2
Query: 278 PSSMF-RCPEGKCIPSLWVCNYQKDCDKGEDEFQ------SCRIKCPVCSKFVLPDD 427
PS+ + +C G CI +C++ DC DE + C + +C+ L DD
Sbjct: 3204 PSAGYVKCTNGGCIQKSKLCDFTDDCGDNSDEGRCALYPARCNFETDLCNWQQLTDD 3260
>SB_35350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 626
Score = 41.9 bits (94), Expect = 5e-04
Identities = 19/67 (28%), Positives = 31/67 (46%)
Frame = +2
Query: 254 HLSGDTVCPSSMFRCPEGKCIPSLWVCNYQKDCDKGEDEFQSCRIKCPVCSKFVLPDDIE 433
H++ C + F C + +CI S W C+ +DC DE I CP S++ + +
Sbjct: 544 HINVPHTCRPNEFTCADKRCILSRWRCDGDRDCADNSDE-----INCPNSSQYCKSSEYQ 598
Query: 434 CHLVMCL 454
C C+
Sbjct: 599 CSTGECI 605
Score = 37.1 bits (82), Expect = 0.014
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +2
Query: 275 CPSSMFRCPEGKCIPSLWVCNYQKDCDKGEDE 370
C SS ++C G+CI WVC+ + DC DE
Sbjct: 592 CKSSEYQCSTGECIHKSWVCDGEFDCLNKSDE 623
>SB_53569| Best HMM Match : EGF_CA (HMM E-Value=0)
Length = 921
Score = 41.1 bits (92), Expect = 8e-04
Identities = 35/114 (30%), Positives = 46/114 (40%), Gaps = 7/114 (6%)
Frame = +2
Query: 275 CPSSMFRCPEGKCIPSLWVCNYQKDCDKG--EDEFQSCRIKCPVCSKFVLPDDIECHLVM 448
C S+ FRC GKCI W C+ Q CD G ED+ C + C+ D+ C
Sbjct: 206 CLSNQFRCNNGKCIDYRWRCDKQLRCDNGRCEDKRWWCDGQ-DDCNDG--SDEKNC---S 259
Query: 449 CLTRPRLSYNEDVLSDSKGECVICLEELSAGDTIARLPCLCIYH-----KGCID 595
P + + ++ G IC E G I + C YH K CID
Sbjct: 260 ASANPTPTNAQGCKLNNGGCAHICAERTIRGHVITKCQCRAGYHLHSDNKQCID 313
Score = 31.9 bits (69), Expect = 0.51
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 275 CPSSMFRCPEGKCIPSLWVCNYQ 343
C S+ FRC GKCI W C+ Q
Sbjct: 18 CLSNQFRCNNGKCIDYRWRCDKQ 40
>SB_43556| Best HMM Match : Ldl_recept_a (HMM E-Value=2.7e-11)
Length = 65
Score = 41.1 bits (92), Expect = 8e-04
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +2
Query: 278 PSSMFRCPEGKCIPSLWVCNYQKDCDKGEDE 370
P + F+C G+CI + WVC+ + DC DE
Sbjct: 8 PDTSFKCDNGRCISATWVCDTENDCGDNSDE 38
>SB_698| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00037)
Length = 303
Score = 41.1 bits (92), Expect = 8e-04
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +2
Query: 509 CVICLEELSAGDTIARLPCLCIYHKGCIDQWFE-VNRSCP 625
C+IC+EE + GD++ LPC +H CI W + CP
Sbjct: 257 CLICMEEYAVGDSMKYLPCRHNFHSACIRTWLTYTSCKCP 296
>SB_39560| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00055)
Length = 545
Score = 41.1 bits (92), Expect = 8e-04
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = +2
Query: 497 SKGECVICLEELSAGDTIARLPCLCIYHKGCIDQWFEVNRS 619
S G CV+C+ + + + + +LPC +H CID+W + R+
Sbjct: 357 SNGSCVVCMMDYTNREKLRKLPCNHDFHSKCIDRWLKAFRA 397
>SB_8478| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1033
Score = 41.1 bits (92), Expect = 8e-04
Identities = 16/44 (36%), Positives = 26/44 (59%)
Frame = +2
Query: 275 CPSSMFRCPEGKCIPSLWVCNYQKDCDKGEDEFQSCRIKCPVCS 406
C ++ C G+C+PS+ +C+ KDC+ G DE + CP+ S
Sbjct: 230 CFTNELTCSSGRCVPSINLCDGVKDCEHGLDELRCGSSVCPLNS 273
>SB_23898| Best HMM Match : Ldl_recept_a (HMM E-Value=1.4013e-45)
Length = 291
Score = 40.7 bits (91), Expect = 0.001
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = +2
Query: 275 CPSSMFRCPEGKCIPSLWVCNYQKDCDKGEDEFQSCRIKCPVC 403
C S+ FRC G CI +VC+ DC G DE R+ C
Sbjct: 134 CGSTQFRCRNGNCINRNYVCDKDNDCGDGSDEVACSRLNGGWC 176
Score = 39.5 bits (88), Expect = 0.003
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +2
Query: 275 CPSSMFRCPEGKCIPSLWVCNYQKDCDKGEDEFQSCR 385
C + +RC +CIP WVC+ DC DE CR
Sbjct: 176 CGAGQYRCDNDRCIPLNWVCDRLNDCHDNSDE-SGCR 211
Score = 33.9 bits (74), Expect = 0.13
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +2
Query: 284 SMFRCPEGKCIPSLWVCNYQKDCDKGEDE 370
S F+C G C+ W C+ DC G DE
Sbjct: 100 SQFKCNNGHCVHRNWKCDGSNDCRDGTDE 128
>SB_13199| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 259
Score = 40.7 bits (91), Expect = 0.001
Identities = 28/102 (27%), Positives = 40/102 (39%), Gaps = 6/102 (5%)
Frame = +2
Query: 275 CPSSMFRCPEGKCIPSLWVCNYQKDCDKGEDE--FQSCRIKCPVCSKFVLPDDIECHLVM 448
CP F C C+P W+C+ DC G DE +S R++ C ++ +C
Sbjct: 21 CPRHEFECENKLCVPRTWLCDGDNDCHDGSDEKNCESRRMRTVKCG----IEEFDCGNST 76
Query: 449 CLTRPRLS---YNEDVLSDSKGECVICLEEL-SAGDTIARLP 562
C+ L Y+ SD +C C E DT P
Sbjct: 77 CIPLTVLCDGLYDCADRSDESKKCEECAERNGGCSDTCRNTP 118
>SB_43823| Best HMM Match : MAM (HMM E-Value=0)
Length = 1724
Score = 40.3 bits (90), Expect = 0.001
Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Frame = +2
Query: 275 CPSSMFRCP-EGKCIPSLWVCNYQKDCDKGEDEFQSCRIKCPVCSKFV---LPDDIECHL 442
C S+ F C + +CI W C+ + DC GEDE Q C PV + + P D
Sbjct: 338 CQSNEFYCSKDDRCINIFWKCDGESDCTDGEDE-QGCATTAPVITPSLGPPHPGDCNFEK 396
Query: 443 VMCL 454
MCL
Sbjct: 397 DMCL 400
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = +2
Query: 275 CPSSMFRCPE-GKCIPSLWVCNYQKDCDKGEDE 370
C ++ RC G C+ VC++ DC G DE
Sbjct: 120 CTANEVRCKNSGHCVQQQQVCDFTDDCGDGTDE 152
Score = 29.1 bits (62), Expect = 3.6
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 8/53 (15%)
Frame = +2
Query: 275 CPSSMFRCPEGK-CIPSLWVCNYQKDCDKGEDE----FQSC---RIKCPVCSK 409
C F+C K CI S +VC+ DC+ DE C +I CPV K
Sbjct: 1303 CNDDQFQCRASKICIKSSFVCDGVPDCNDHSDEDDCPNSDCNLEQIYCPVSQK 1355
>SB_32416| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0021)
Length = 358
Score = 39.9 bits (89), Expect = 0.002
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +2
Query: 479 EDVLSDSKGECVICLEELSAGDTIARLPCLCIYHKGCIDQWFE 607
E + CV+CL + + LPCL YH CID+W +
Sbjct: 283 ESKKQNDDARCVVCLVDFEEKQLVRTLPCLHEYHTRCIDKWLK 325
>SB_51898| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1712
Score = 39.9 bits (89), Expect = 0.002
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +2
Query: 263 GDTVCPSSMFRCPEGKCIPSLWVCNYQKDCDKGEDE 370
G C + FRC GKCI + W C+ DC DE
Sbjct: 1379 GCATCEPNFFRCNTGKCISARWQCDQLDDCGDNSDE 1414
Score = 34.7 bits (76), Expect = 0.073
Identities = 18/61 (29%), Positives = 27/61 (44%)
Frame = +2
Query: 275 CPSSMFRCPEGKCIPSLWVCNYQKDCDKGEDEFQSCRIKCPVCSKFVLPDDIECHLVMCL 454
C + FRC G+CI C+ K+C G DE + C C P+ C+ C+
Sbjct: 1346 CKENQFRCDNGQCIDGDPRCDKYKNCTDGSDE-----LGCATCE----PNFFRCNTGKCI 1396
Query: 455 T 457
+
Sbjct: 1397 S 1397
Score = 32.7 bits (71), Expect = 0.29
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Frame = +2
Query: 239 QVDTRHLSGDTVCPSSMFRCPEGK--CIPSLWVCNYQKDC-DKGEDEFQSCRIKCPVCSK 409
Q D ++ + C + C K CIP +W C+ DC DK ++E CP C +
Sbjct: 1295 QDDEKNCGEPSTCKPNYISCASMKAICIPKMWRCDGMLDCTDKSDEE------DCPPCKE 1348
>SB_18178| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 489
Score = 39.5 bits (88), Expect = 0.003
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +2
Query: 242 VDTRHLSGDTVCP-SSMFRCPEGKCIPSLWVCNYQKDCDKGEDE 370
++T D C SS F+C G CIP W+C+ + DC DE
Sbjct: 347 LNTTQEERDAPCKISSWFKCRSGVCIPPQWICDGKDDCGDRSDE 390
>SB_33423| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-22)
Length = 133
Score = 39.5 bits (88), Expect = 0.003
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +2
Query: 275 CPSSMFRCPEGK-CIPSLWVCNYQKDCDKGEDE 370
C + +RC GK CIP W+C+ DCD DE
Sbjct: 23 CAADRYRCDNGKKCIPLKWICDSVADCDDKRDE 55
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +2
Query: 275 CPSSMFRCPE-GKCIPSLWVCNYQKDCDKGEDEFQSCRI 388
C F C + KC+ +C+ DCD G DE ++C I
Sbjct: 88 CAEGQFACEKTNKCLAKSSLCDTVHDCDDGSDE-KNCPI 125
>SB_31927| Best HMM Match : Ldl_recept_a (HMM E-Value=2.3e-27)
Length = 157
Score = 39.5 bits (88), Expect = 0.003
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +2
Query: 275 CPSSMFRCPEGKCIPSLWVCNYQKDCDKGEDEFQSCR 385
C + +RC +CIP WVC+ DC DE CR
Sbjct: 42 CGAGQYRCDNDRCIPLNWVCDRLNDCHDNSDE-SGCR 77
Score = 37.9 bits (84), Expect = 0.008
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = +2
Query: 281 SSMFRCPEGKCIPSLWVCNYQKDCDKGEDEFQSCRIKCPVC 403
S+ FRC G CI +VC+ DC G DE R+ C
Sbjct: 2 STQFRCRNGNCINRNYVCDKDNDCGDGSDEVACSRLNGGWC 42
>SB_31087| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-32)
Length = 1039
Score = 39.5 bits (88), Expect = 0.003
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +2
Query: 275 CPSSMFRCPEGK-CIPSLWVCNYQKDCDKGEDE 370
C + +RC GK CIP W+C+ DCD DE
Sbjct: 836 CAADRYRCDNGKKCIPLKWICDSVADCDDKRDE 868
Score = 35.5 bits (78), Expect = 0.042
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +2
Query: 275 CPSSMFRCPEG-KCIPSLWVCNYQKDCDKGEDEFQSCRIKCP 397
C S F C G KC+P W+C+ DC +DE +C P
Sbjct: 947 CGSDKFTCDNGAKCLPLTWLCDSITDCMDSKDE-HNCPATIP 987
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +2
Query: 275 CPSSMFRCPE-GKCIPSLWVCNYQKDCDKGEDEFQSCRI 388
C F C + KC+ +C+ DCD G DE ++C I
Sbjct: 901 CAEGQFACEKTNKCLAKSSLCDTVHDCDDGSDE-KNCPI 938
>SB_17897| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-14)
Length = 1217
Score = 39.5 bits (88), Expect = 0.003
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +2
Query: 275 CPSSMFRCPEGKCIPSLWVCNYQKDCDKGEDEFQSCRI 388
C ++ C G+C+PS+ +C+ KDC+ G DE + R+
Sbjct: 1140 CFTNELTCSSGRCVPSINLCDGVKDCEHGLDELRCVRL 1177
>SB_26126| Best HMM Match : Ldl_recept_b (HMM E-Value=3e-24)
Length = 652
Score = 38.7 bits (86), Expect = 0.004
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +2
Query: 275 CPSSMFRCPE-GKCIPSLWVCNYQKDCDKGEDEFQSCRI 388
C F+C G+CIP VC+ +DC GEDE C I
Sbjct: 211 CMPGEFKCQSTGRCIPESKVCDGTRDCQDGEDEPLRCNI 249
>SB_22727| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 38.3 bits (85), Expect = 0.006
Identities = 13/34 (38%), Positives = 23/34 (67%)
Frame = +2
Query: 275 CPSSMFRCPEGKCIPSLWVCNYQKDCDKGEDEFQ 376
C ++ C G+C+PS+ +C+ KDC++G DE +
Sbjct: 311 CFTNELTCSSGRCVPSINLCDGVKDCEQGLDELR 344
>SB_45709| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1112
Score = 37.9 bits (84), Expect = 0.008
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +2
Query: 269 TVCPSSMFRCPEGKCIPSLWVCNYQKDCDKGEDE 370
T C ++ FRC +G+CI S + C+ + DC DE
Sbjct: 381 TTCSANEFRCDDGRCITSTFRCDREFDCTDRSDE 414
Score = 36.3 bits (80), Expect = 0.024
Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Frame = +2
Query: 254 HLSGDTVC-PSSMFRCPEGKCIPSLWVCNYQKDCDKGEDEFQSCRIKCPVCSKFVLPDDI 430
HLS C P + C G+C+ W+C+ DC DE +C + P P D
Sbjct: 293 HLSTAKTCNPVTDHTCRNGRCVLKEWLCDGMDDCGDSSDE-DNCPTRPPYTCP---PSDF 348
Query: 431 ECHLVMCL 454
C C+
Sbjct: 349 TCANSQCV 356
Score = 35.5 bits (78), Expect = 0.042
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = +2
Query: 275 CPSSMFRCPEGKCIPSLWVCNYQKDCDKGEDEFQSCRIKCPVCSKFVLPDDIEC 436
CP S F C +C+P+ + C+ + DC DE C+ + DD C
Sbjct: 343 CPPSDFTCANSQCVPNSFRCDGENDCGDRSDE-SGCKPTTTCSANEFRCDDGRC 395
Score = 35.1 bits (77), Expect = 0.055
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +2
Query: 275 CPSSMFRCPEGKCIPSLWVCNYQKDCDKGEDE 370
C S C G+CI + W+C+ DC DE
Sbjct: 130 CDPSQHTCNNGQCIKASWLCDGASDCQDNSDE 161
Score = 33.9 bits (74), Expect = 0.13
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +2
Query: 275 CPSSMFRCP-EGKCIPSLWVCNYQKDCDKGEDEFQSCR 385
C F C G+CIP + C+++ DC G DE Q+C+
Sbjct: 422 CAPYEFTCAFSGRCIPGRFRCDHRSDCLDGSDE-QNCQ 458
Score = 33.9 bits (74), Expect = 0.13
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Frame = +2
Query: 272 VCPSSMFRCPEGK-CIPSLWVCNYQKDCDKGEDEFQSCRIKCPVCSK---FVLPDDIEC 436
VCP FRC CI + VC+ C GEDE ++C + + F+ PD EC
Sbjct: 571 VCPRDHFRCGSSTICIANSKVCDATPHCPHGEDE-RNCATRNILIRSIIVFIPPDIDEC 628
Score = 33.5 bits (73), Expect = 0.17
Identities = 22/88 (25%), Positives = 32/88 (36%), Gaps = 1/88 (1%)
Frame = +2
Query: 248 TRHLSGDTVCPSSMFRCPEGK-CIPSLWVCNYQKDCDKGEDEFQSCRIKCPVCSKFVLPD 424
TR C + C +G C+ W+C+ ++DC G DE I C D
Sbjct: 461 TRPTPPPVKCRKNERMCADGNGCVHRRWICDGERDCLDGSDEAGCGTIGCS-------SD 513
Query: 425 DIECHLVMCLTRPRLSYNEDVLSDSKGE 508
+ C C+ P+ D D E
Sbjct: 514 EFTCTNQKCIPLPQKCDGTDNCGDGSDE 541
>SB_55149| Best HMM Match : Ldl_recept_a (HMM E-Value=2.6e-23)
Length = 190
Score = 37.9 bits (84), Expect = 0.008
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +2
Query: 275 CPSSMFRC-PEGKCIPSLWVCNYQKDCDKGEDE 370
C S F+C +GKCIP W C+ + DC DE
Sbjct: 90 CGSRHFKCVSDGKCIPKSWRCDGEMDCPDSSDE 122
Score = 34.7 bits (76), Expect = 0.073
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 275 CPSSMFRCPEGKCIPSLWVCNYQKDCDKGEDEFQSC 382
C S F C +C+P W C+ +KDC G + + C
Sbjct: 130 CSSKEFNC-NNQCVPLSWKCDGEKDCRPGGFDEEGC 164
>SB_56441| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1717
Score = 37.5 bits (83), Expect = 0.010
Identities = 22/56 (39%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = +2
Query: 242 VDTRHLSGDTVCPSSMFRCPEGKCIPSLWVCNYQKDCDKGEDEFQ--SCRIKCPVC 403
VD SG T C F+C G+CI C+ +KDC G DE SC + VC
Sbjct: 686 VDGSDESGCT-CGLHEFQCSSGECIEVATFCDGKKDCGDGFDETHCGSCPVSSVVC 740
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Frame = +2
Query: 275 CPSSMFRCPEGKCIPSLWVCNYQKD-CDKGEDE 370
C +F C G+C+ CN +D C G DE
Sbjct: 659 CLDHLFTCNNGECVTKTSRCNGMRDSCVDGSDE 691
>SB_21487| Best HMM Match : MAM (HMM E-Value=0)
Length = 874
Score = 37.1 bits (82), Expect = 0.014
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +2
Query: 275 CPSSMFRCPEGKCIPSLWVCNYQKDCDKGEDEFQSCRIKCP 397
C ++C G+CI +C++ KDC G DE ++C ++ P
Sbjct: 704 CTPESYKCRSGECISLDLLCDFNKDCLDGSDE-ENCGVQDP 743
>SB_35576| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1315
Score = 37.1 bits (82), Expect = 0.014
Identities = 26/82 (31%), Positives = 34/82 (41%)
Frame = +2
Query: 275 CPSSMFRCPEGKCIPSLWVCNYQKDCDKGEDEFQSCRIKCPVCSKFVLPDDIECHLVMCL 454
C SS F C G+CI + +C+ DC DE C K CSK D+ +C C+
Sbjct: 1155 CLSSKFACESGECIDVVGLCDGTDDCKDASDE-SRCDHK---CSK----DEYQCVSGACV 1206
Query: 455 TRPRLSYNEDVLSDSKGECVIC 520
P + D E IC
Sbjct: 1207 KWPLTCDGKKDCEDGTDEPGIC 1228
Score = 34.7 bits (76), Expect = 0.073
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = +2
Query: 266 DTVCPSSMFRCPEGKCIPSLWVCNYQKDCDKGEDEFQSCRIKCPVCSKFVL 418
D C ++C G C+ C+ +KDC+ G DE C ++ + + L
Sbjct: 1190 DHKCSKDEYQCVSGACVKWPLTCDGKKDCEDGTDEPGICGVQIGTLNIYAL 1240
>SB_23054| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 482
Score = 36.3 bits (80), Expect = 0.024
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = +2
Query: 509 CVICLEELSAGDTIARLPCLCIYHKGCIDQWFEVNRSCP 625
C +CL + +L C ++H+ CID W CP
Sbjct: 212 CGVCLSAYHPLQYVRKLQCRHVFHRDCIDSWLATQSICP 250
>SB_2014| Best HMM Match : MAM (HMM E-Value=0)
Length = 2282
Score = 36.3 bits (80), Expect = 0.024
Identities = 17/50 (34%), Positives = 29/50 (58%)
Frame = +2
Query: 275 CPSSMFRCPEGKCIPSLWVCNYQKDCDKGEDEFQSCRIKCPVCSKFVLPD 424
C ++ C G+C+ S+ +C+ +DC+ G DE + C C S+F+ PD
Sbjct: 245 CFTNELTCSSGRCVQSINLCDGVRDCEYGLDELR-CGDGCK-NSEFLCPD 292
Score = 30.7 bits (66), Expect = 1.2
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = +2
Query: 275 CPSSMFRCPEGKCIPSLWVCNYQKDCDKGEDE 370
C +S F CP+ CIP CN +DE
Sbjct: 283 CKNSEFLCPDSTCIPWSSTCNQSTQASHCQDE 314
>SB_9476| Best HMM Match : RuvB_N (HMM E-Value=0.35)
Length = 848
Score = 36.3 bits (80), Expect = 0.024
Identities = 17/41 (41%), Positives = 19/41 (46%)
Frame = +2
Query: 383 RIKCPVCSKFVLPDDIECHLVMCLTRPRLSYNEDVLSDSKG 505
R +CPVC K P I H+ CL E L DSKG
Sbjct: 146 RAECPVCGKSFSPKQINSHVEDCLKATENGEEERTLQDSKG 186
>SB_28040| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 391
Score = 35.5 bits (78), Expect = 0.042
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +2
Query: 275 CPSSMFRCPEGKCIPSLWVCNYQKDCDKGEDEFQ 376
C ++ C G+C+PS+ +C+ KDC++ DE +
Sbjct: 267 CFTNELTCSSGRCVPSINLCDGVKDCEQDLDELR 300
>SB_26589| Best HMM Match : DUF477 (HMM E-Value=5.2e-18)
Length = 398
Score = 35.1 bits (77), Expect = 0.055
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +2
Query: 509 CVICLEELSAGDTIARLPCLCIYHKGCIDQWFEVNRSCP 625
C ICLEE + L C Y + C+ +W E N +CP
Sbjct: 262 CPICLEEFTPETPTRLLVCGHKYCEPCLSRWLENNTTCP 300
>SB_5319| Best HMM Match : Ldl_recept_a (HMM E-Value=7.56701e-44)
Length = 212
Score = 35.1 bits (77), Expect = 0.055
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +2
Query: 245 DTRHLSGDTVCPSSMFRCPEGK-CIPSLWVCNYQKDCDKGEDE 370
D R+ +G T C F C G+ CI W+C+ + DC DE
Sbjct: 105 DERNCTGKT-CKPFEFACANGRHCIQRKWICDGENDCGDRSDE 146
Score = 31.1 bits (67), Expect = 0.90
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +2
Query: 275 CPSSMFRCP-EGKCIPSLWVCNYQKDCDKGEDEFQSCRIKCPVCSKF 412
C S+ F+C +CIP +VC+ DC DE ++C K C F
Sbjct: 74 CHSTEFQCETSSRCIPLRFVCDADDDCGDRSDE-RNCTGK--TCKPF 117
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Frame = +2
Query: 275 CPSSMFRCPE-GKCIPSLWVCNYQKDCDKGEDEFQSC 382
C + +RC +CI VC+ + DC DE C
Sbjct: 154 CGNDRWRCSNTSRCIAKSQVCDGRVDCPDASDEGPGC 190
>SB_50657| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 442
Score = 34.7 bits (76), Expect = 0.073
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +2
Query: 275 CPSSMFRCPEGKCIPSLWVCNYQKDCDKGEDE 370
C + FRC G+CI VC+ DC DE
Sbjct: 5 CKAGDFRCANGRCISGALVCDLDDDCGDESDE 36
>SB_29580| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-38)
Length = 130
Score = 34.3 bits (75), Expect = 0.096
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +2
Query: 275 CPSSMFRCPEGKCIPSLWVCNYQKDCDKGEDEFQSCRIK 391
C ++ FRC G+CI + C+ + DC DE Q C K
Sbjct: 4 CSATEFRCNNGRCITRAFRCDDEDDCLDNSDE-QGCSRK 41
Score = 32.7 bits (71), Expect = 0.29
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +2
Query: 272 VCPSSMFRCPEG-KCIPSLWVCNYQKDCDKGEDEFQSCRIKCP 397
VC F+C KCI +C+ + DC GEDE + + P
Sbjct: 42 VCRDDQFQCGTSRKCIRKSKICDGKSDCSGGEDEKNCVKPQTP 84
Score = 29.9 bits (64), Expect = 2.1
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = +2
Query: 275 CPSSMFRCPEGK-CIPSLWVCNYQKDCDKGEDE 370
C S RC G C+ + +C+ +DC G DE
Sbjct: 94 CRISQRRCDNGSGCVDRMKICDGMRDCADGSDE 126
>SB_45605| Best HMM Match : MAM (HMM E-Value=2.1e-16)
Length = 187
Score = 33.9 bits (74), Expect = 0.13
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +2
Query: 275 CPSSMFRCPEGKCIPSLWVCNYQKDCDKGEDEFQSCRIKC 394
C +S + C KC+ +CN++ DC DE C C
Sbjct: 145 CLASQYVCANSKCVDRDQLCNFKDDCGDNSDEL-PCGTSC 183
>SB_20531| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 796
Score = 33.9 bits (74), Expect = 0.13
Identities = 13/41 (31%), Positives = 17/41 (41%)
Frame = +2
Query: 275 CPSSMFRCPEGKCIPSLWVCNYQKDCDKGEDEFQSCRIKCP 397
C F C G C+P VC+ DC DE ++ P
Sbjct: 216 CSEEEFPCASGDCVPLTSVCDGSADCSDSSDEAPELCVRYP 256
>SB_19614| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 603
Score = 33.5 bits (73), Expect = 0.17
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +2
Query: 257 LSGDTVCPSSMFRCPEGKCIPSLWVCNYQKDCDKGEDEFQSC 382
+S + C F C +CI CN ++DC G DE SC
Sbjct: 386 VSSEGPCGPKKFTCQNRQCIDDFKQCNNRQDCRDGSDEI-SC 426
>SB_10498| Best HMM Match : Ldl_recept_a (HMM E-Value=2.7e-07)
Length = 106
Score = 33.5 bits (73), Expect = 0.17
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +2
Query: 269 TVCPSSMFRCPEGKCIPSLWVCNYQKDCDKGEDE 370
+ CP S + C +G CI CN + DC DE
Sbjct: 2 STCPGSKYECRDGTCIDRNEHCNGKIDCPDASDE 35
>SB_9645| Best HMM Match : DUF101 (HMM E-Value=4.3)
Length = 360
Score = 33.1 bits (72), Expect = 0.22
Identities = 17/81 (20%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Frame = -1
Query: 512 HIRLSSRSEHPHYKIDVASSGTLRDGTLCR-PVKRTCCTPDILYDKTGIRLRPYRSPSGS 336
H L + + Y D G +++ + R ++ +C + DI+Y + P +
Sbjct: 191 HFTLKTDQKSVSYMFDQCHKGKIKNDKIMRWKIELSCYSFDIIYRPGKENIPPDTLSRAT 250
Query: 335 CTPTAKGCIYPLDTGTCYSGI 273
C ++ +Y L C+SG+
Sbjct: 251 CATLSEDPLYQLHESLCHSGV 271
>SB_47583| Best HMM Match : SAP (HMM E-Value=8.9e-08)
Length = 407
Score = 33.1 bits (72), Expect = 0.22
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +2
Query: 389 KCPVCSKFVLPDDIECHLVMCLTR 460
+CPVC + +L + HL +CLTR
Sbjct: 64 ECPVCGELILQSKVNSHLDLCLTR 87
>SB_32949| Best HMM Match : SAP (HMM E-Value=1)
Length = 269
Score = 33.1 bits (72), Expect = 0.22
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +2
Query: 389 KCPVCSKFVLPDDIECHLVMCLTR 460
+CPVC + +L + HL +CLTR
Sbjct: 142 ECPVCGELILQSKVNSHLDLCLTR 165
>SB_53400| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1130
Score = 32.7 bits (71), Expect = 0.29
Identities = 24/83 (28%), Positives = 31/83 (37%), Gaps = 5/83 (6%)
Frame = -1
Query: 431 LCRPVKRTCCTPDILYDKTGIRLRPYRSPSGSCTPTAKGCIYPLDTGTC-----YSGILC 267
+ + KR+C I D +G + P PS C K C+Y G C Y C
Sbjct: 816 MLKSCKRSC---GICEDPSGSKATPVGDPSLPCEDKHKSCVYWASIGVCDVRPTYMYKHC 872
Query: 266 RLIGVSCRPVLPPPQPAGGGRTP 198
RL C PV P + P
Sbjct: 873 RLACRVCTPVKKHEGPPCDNKDP 895
>SB_17138| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 490
Score = 32.7 bits (71), Expect = 0.29
Identities = 19/71 (26%), Positives = 27/71 (38%)
Frame = +2
Query: 359 GEDEFQSCRIKCPVCSKFVLPDDIECHLVMCLTRPRLSYNEDVLSDSKGECVICLEELSA 538
G C ++CP+C + L IE H C S + +C IC++ L
Sbjct: 403 GSSSASECHVECPICGQLFLDYLIEEHASRCTDFAPCSPPHQSSPEELVDCPICIKRLPR 462
Query: 539 GDTIARLPCLC 571
IA LC
Sbjct: 463 -SAIAEHANLC 472
>SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34)
Length = 1120
Score = 32.3 bits (70), Expect = 0.39
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = +2
Query: 275 CPSSMFRCPEGKCIPSLWVCNYQKDCDKGEDE 370
C F C +CIP + C+ +DC DE
Sbjct: 23 CDPGQFECTSSECIPDVLKCDGSEDCADSSDE 54
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Frame = +2
Query: 269 TVCPSSMFRCP-EGKCIPSLWVCNYQKDCDKGEDE 370
++C F C EG CIP C+ DC G DE
Sbjct: 61 SMCRVDQFECLIEGDCIPLSKHCDGTWDCQHGTDE 95
>SB_27553| Best HMM Match : Pyr_redox (HMM E-Value=1.1e-20)
Length = 1037
Score = 32.3 bits (70), Expect = 0.39
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -1
Query: 479 HYKIDVASSGTLRDGTLCRPVKRTCCTPDILYDKTGIRLRP 357
HYK++ G L T+ + R CT I +K G++L P
Sbjct: 849 HYKLEGGEEGHLDCNTVVFAIGRDACTTGIGLEKVGVKLNP 889
>SB_47409| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-17)
Length = 1571
Score = 31.9 bits (69), Expect = 0.51
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = +2
Query: 275 CPSSMFRCP-EGKCIPSLWVCNYQKDCDKGEDEFQSCRI 388
C + F C G+C+P CN Q DC DE Q C I
Sbjct: 726 CGNGEFYCGVPGECVPQTLRCNGQMDCRDASDE-QDCGI 763
>SB_55367| Best HMM Match : Granulin (HMM E-Value=0.00023)
Length = 565
Score = 31.5 bits (68), Expect = 0.68
Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Frame = +2
Query: 263 GDTVCPSSMFRCPEGK-CIPSLW 328
G TVCP ++ RCP G C PS++
Sbjct: 155 GSTVCPDTLTRCPAGSTCCPSVF 177
>SB_43575| Best HMM Match : Sina (HMM E-Value=0)
Length = 432
Score = 31.5 bits (68), Expect = 0.68
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Frame = +2
Query: 389 KCPVCSKFVLPDDIEC---HLVMCLTRPRLS 472
+CPVC +VLP ++C HLV RP+L+
Sbjct: 36 ECPVCFDYVLPPILQCSSGHLVCSNCRPKLT 66
>SB_39138| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 624
Score = 31.5 bits (68), Expect = 0.68
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Frame = +2
Query: 488 LSDSKGECVICLEELSAGDTIARLPC-LC--IYHKGCIDQWFEVNRSC 622
L+ C +CL+ + A RLPC LC I+H C+ +E++R C
Sbjct: 218 LNPGPTNCAVCLKGIRARQP--RLPCHLCEQIFHLKCLGAEYELSRCC 263
>SB_21610| Best HMM Match : HSF_DNA-bind (HMM E-Value=0.32)
Length = 425
Score = 31.1 bits (67), Expect = 0.90
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +2
Query: 386 IKCPVCSKFVLPDDIECHLVMCL 454
IKCPVC + D IE HLV C+
Sbjct: 401 IKCPVCDEIFPHDQIEEHLVDCV 423
>SB_43631| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1157
Score = 29.9 bits (64), Expect = 2.1
Identities = 30/98 (30%), Positives = 43/98 (43%), Gaps = 7/98 (7%)
Frame = -3
Query: 570 QRHGRRAIVSPADSSSRHITHSPFESLRTSSL*DRRGLVRHITRWHSMSSGKTNL----- 406
++HG D++ + S F + T L + R V+ T+W + + L
Sbjct: 499 RKHGLDDSHGEEDTTKQCFIFSAFTAENTRKLQEPR--VKGTTKWTLPDTFQPFLFRPRR 556
Query: 405 LHTGHFIRQDW--NSSSPLSQSFW*LHTHSEGMHLPSG 298
L T HF + NS SPLS W LHT + G HL G
Sbjct: 557 LETRHFTGCMFVNNSDSPLS---WTLHTQAAGPHLEDG 591
>SB_39219| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1951
Score = 29.9 bits (64), Expect = 2.1
Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Frame = +2
Query: 455 TRPRLSY---NED-VLSDS-KGECVICLEELSAGDTIARLPCLCIYHKGCIDQWFEVNRS 619
TR + Y +ED +LSD G C++ L I LC HK CI Q N+
Sbjct: 215 TRDMIKYFPASEDGLLSDMLPGGCILVLNTADVQQHILPWTTLCALHKNCI-QPTGANKD 273
Query: 620 CP 625
CP
Sbjct: 274 CP 275
>SB_3059| Best HMM Match : REJ (HMM E-Value=4.8e-06)
Length = 2009
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +1
Query: 175 IKHAERQGGVLPPPAGCGGGSTGRHETPIRRHSMPE*HVP 294
I+H + + PP A +T RH PIR H++ H P
Sbjct: 398 IRHRAQHLPLTPPRATSNSYATARHIYPIRHHALHLPHTP 437
>SB_25066| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1167
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Frame = +2
Query: 293 RCPEGKCIPSLWVCNY---QKDCDKGEDEFQSCRIKCPVCSKFVLPDDIECHLVMC 451
+ P+G C PS C+ + + E S ++CP+C + DIE H C
Sbjct: 315 QAPDGPCQPSRADCSDIIPPRTSTEKEQPSTSGTVQCPICLQLFCYSDIEEHAAGC 370
>SB_20965| Best HMM Match : Fz (HMM E-Value=3.1)
Length = 529
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/30 (53%), Positives = 17/30 (56%)
Frame = -3
Query: 384 RQDWNSSSPLSQSFW*LHTHSEGMHLPSGH 295
R D SS+P SQS HTH MH P GH
Sbjct: 320 RHDSFSSAPPSQSGSPSHTHRLRMHSPLGH 349
>SB_4080| Best HMM Match : zf-C3HC4 (HMM E-Value=0.23)
Length = 203
Score = 29.9 bits (64), Expect = 2.1
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +2
Query: 530 LSAGDTIARLPCLCIYHKGCIDQWFEVNRSCPEH 631
+S +I+ PC+ + C QW E +R CP +
Sbjct: 70 MSDSFSISLQPCMHSFCASCYSQWMEHSRDCPSN 103
>SB_6618| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 574
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/48 (25%), Positives = 23/48 (47%)
Frame = +2
Query: 467 LSYNEDVLSDSKGECVICLEELSAGDTIARLPCLCIYHKGCIDQWFEV 610
+S N+D + +C +CL LS C+ ++ CI +W ++
Sbjct: 88 ISDNDDATMSNSAQCPVCLMSLSEQKLGTPNSCMHVFCLECILEWSKI 135
>SB_18810| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 105
Score = 29.1 bits (62), Expect = 3.6
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 8/53 (15%)
Frame = +2
Query: 275 CPSSMFRCPEGK-CIPSLWVCNYQKDCDKGEDE----FQSC---RIKCPVCSK 409
C F+C K CI S +VC+ DC+ DE C +I CPV K
Sbjct: 6 CNDDQFQCRASKICIKSSFVCDGVPDCNDHSDEDDCPNSDCNLEQIYCPVSQK 58
>SB_46259| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 188
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +3
Query: 171 CYKTCGA-PGRRSASSCWLRRRQHRSTRDTYQATQYARVACSGVQRVNASL 320
C+K G R S WL ++H Y T+Y +ACS V +++L
Sbjct: 50 CHKFLGVWKARSSCGMAWLNVKKHNLLHSLYNITRYT-MACSYVLLFDSNL 99
>SB_45482| Best HMM Match : BTB (HMM E-Value=5.6e-11)
Length = 3037
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 5/41 (12%)
Frame = +2
Query: 347 DCDKGEDEFQSCRIKCPVCSKFVLP-----DDIECHLVMCL 454
+C +D+ + KCPVCSK V P +++ H + CL
Sbjct: 237 ECKVVDDKLDNSESKCPVCSK-VFPATDSEEEMNAHALKCL 276
>SB_14155| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 495
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 5/41 (12%)
Frame = +2
Query: 347 DCDKGEDEFQSCRIKCPVCSKFVLP-----DDIECHLVMCL 454
+C +D+ + KCPVCSK V P +++ H + CL
Sbjct: 237 ECKVVDDKLDNSESKCPVCSK-VFPATDSEEEMNAHALKCL 276
>SB_40225| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1442
Score = 27.9 bits (59), Expect = 8.4
Identities = 9/32 (28%), Positives = 16/32 (50%)
Frame = +2
Query: 506 ECVICLEELSAGDTIARLPCLCIYHKGCIDQW 601
EC++C++ I L C C + C+ Q+
Sbjct: 1004 ECIVCMDLKPENRMITMLNCQCRFCSDCVSQY 1035
>SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1870
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Frame = +2
Query: 266 DTVCPSSMFRCPE----GKCIPSLWVCNYQKDCDKGEDEFQSCR 385
D VC CP+ G+C S N QK CD + +CR
Sbjct: 1236 DAVCADRNMYCPQYKQWGRCSDSWTRQNCQKSCDLCPQQQDACR 1279
>SB_46226| Best HMM Match : Ion_trans (HMM E-Value=1.4013e-45)
Length = 727
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 186 GAPGRRSASSCWLRRRQHRSTRDTYQA 266
G ++ S CWL RQHR ++T A
Sbjct: 218 GIDDQQVESCCWLTYRQHRDAQETLAA 244
>SB_14351| Best HMM Match : zf-B_box (HMM E-Value=2.3e-12)
Length = 549
Score = 27.9 bits (59), Expect = 8.4
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = +2
Query: 317 PSLWVCNYQ--KDCDKGEDEFQSCRIKCPVCSKFVLPDDIECHL 442
P L C + K C K ++ Q I CPVC D+ECHL
Sbjct: 31 PRLLPCLHSLCKKCLKDIEQAQEGAIACPVCL-----TDVECHL 69
>SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2656
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3
Query: 72 LSHSNFRTSCAGRQYRNINRSLLVYVL 152
L+H F+T R +I+R++LVY L
Sbjct: 1047 LTHGRFKTKIGERDVESISRTILVYCL 1073
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,864,716
Number of Sequences: 59808
Number of extensions: 573651
Number of successful extensions: 3560
Number of sequences better than 10.0: 77
Number of HSP's better than 10.0 without gapping: 3139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3548
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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