Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc9f06
(747 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_6824| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.035
SB_27983| Best HMM Match : PAN (HMM E-Value=0.0022) 35 0.081
SB_48885| Best HMM Match : DUF741 (HMM E-Value=0.88) 31 0.75
SB_54883| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_52473| Best HMM Match : MMR_HSR1 (HMM E-Value=0.0026) 30 2.3
SB_17671| Best HMM Match : 7tm_1 (HMM E-Value=0.00083) 30 2.3
SB_33848| Best HMM Match : RasGEF_N (HMM E-Value=2.3e-13) 29 3.0
SB_26218| Best HMM Match : Disintegrin (HMM E-Value=0.85) 29 5.3
SB_2908| Best HMM Match : HMG_box (HMM E-Value=1.5e-08) 29 5.3
SB_47830| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_41175| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_46572| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
SB_8404| Best HMM Match : TPR_1 (HMM E-Value=0) 28 9.2
>SB_6824| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1152
Score = 35.9 bits (79), Expect = 0.035
Identities = 11/41 (26%), Positives = 33/41 (80%)
Frame = -1
Query: 432 LYNISRSPAVFKQSQPTVFKQSQPTVFKQSQPTVFKQSQTS 310
+Y +S+ P++F+ S+P++++ +P++++ S+P++++ S+ S
Sbjct: 592 MYELSK-PSIFELSKPSIYELLEPSIYELSKPSIYELSKPS 631
Score = 35.1 bits (77), Expect = 0.061
Identities = 12/41 (29%), Positives = 32/41 (78%)
Frame = -1
Query: 432 LYNISRSPAVFKQSQPTVFKQSQPTVFKQSQPTVFKQSQTS 310
+Y +S+ P++++ S+P++ + S+P++F+ S+P +++ S+ S
Sbjct: 496 IYELSK-PSIYELSKPSIHELSKPSIFELSKPFIYEVSKPS 535
Score = 34.3 bits (75), Expect = 0.11
Identities = 10/39 (25%), Positives = 32/39 (82%)
Frame = -1
Query: 432 LYNISRSPAVFKQSQPTVFKQSQPTVFKQSQPTVFKQSQ 316
+Y++ + P++++ S+P++++ S+P++ + S+P++F+ S+
Sbjct: 488 IYDVGK-PSIYELSKPSIYELSKPSIHELSKPSIFELSK 525
Score = 33.9 bits (74), Expect = 0.14
Identities = 11/41 (26%), Positives = 32/41 (78%)
Frame = -1
Query: 432 LYNISRSPAVFKQSQPTVFKQSQPTVFKQSQPTVFKQSQTS 310
+Y +S+ P++++ S+P +++ S+P++F+ S+P++++ + S
Sbjct: 576 IYELSK-PSIYELSKPFMYELSKPSIFELSKPSIYELLEPS 615
Score = 33.9 bits (74), Expect = 0.14
Identities = 11/41 (26%), Positives = 32/41 (78%)
Frame = -1
Query: 432 LYNISRSPAVFKQSQPTVFKQSQPTVFKQSQPTVFKQSQTS 310
+Y +S+ P +++ S+P++F+ S+P++++ +P++++ S+ S
Sbjct: 584 IYELSK-PFMYELSKPSIFELSKPSIYELLEPSIYELSKPS 623
Score = 33.5 bits (73), Expect = 0.19
Identities = 12/41 (29%), Positives = 29/41 (70%)
Frame = -1
Query: 432 LYNISRSPAVFKQSQPTVFKQSQPTVFKQSQPTVFKQSQTS 310
L N R P+V++ S+P++++ S+P ++ +P++++ S+ S
Sbjct: 463 LENGFRQPSVYEVSKPSIYEISKPYIYDVGKPSIYELSKPS 503
Score = 33.5 bits (73), Expect = 0.19
Identities = 10/34 (29%), Positives = 28/34 (82%)
Frame = -1
Query: 411 PAVFKQSQPTVFKQSQPTVFKQSQPTVFKQSQTS 310
P++++ S+P++++ S+P +++ S+P++F+ S+ S
Sbjct: 574 PSIYELSKPSIYELSKPFMYELSKPSIFELSKPS 607
Score = 33.1 bits (72), Expect = 0.25
Identities = 11/41 (26%), Positives = 31/41 (75%)
Frame = -1
Query: 432 LYNISRSPAVFKQSQPTVFKQSQPTVFKQSQPTVFKQSQTS 310
+Y +S+ P++ + S+P++F+ S+P +++ S+P++++ + S
Sbjct: 504 IYELSK-PSIHELSKPSIFELSKPFIYEVSKPSIYELLEPS 543
Score = 32.7 bits (71), Expect = 0.33
Identities = 10/41 (24%), Positives = 31/41 (75%)
Frame = -1
Query: 432 LYNISRSPAVFKQSQPTVFKQSQPTVFKQSQPTVFKQSQTS 310
+Y +S+ P++++ S+P ++ +P++++ S+P++++ S+ S
Sbjct: 472 VYEVSK-PSIYEISKPYIYDVGKPSIYELSKPSIYELSKPS 511
Score = 32.7 bits (71), Expect = 0.33
Identities = 10/41 (24%), Positives = 32/41 (78%)
Frame = -1
Query: 432 LYNISRSPAVFKQSQPTVFKQSQPTVFKQSQPTVFKQSQTS 310
++ +S+ P++F+ S+P +++ S+P++++ +P++++ S+ S
Sbjct: 512 IHELSK-PSIFELSKPFIYEVSKPSIYELLEPSIYELSKPS 551
Score = 32.7 bits (71), Expect = 0.33
Identities = 10/41 (24%), Positives = 32/41 (78%)
Frame = -1
Query: 432 LYNISRSPAVFKQSQPTVFKQSQPTVFKQSQPTVFKQSQTS 310
+Y +S+ P++++ +P++++ S+P++++ S+P +++ S+ S
Sbjct: 560 IYELSK-PSIYELLEPSIYELSKPSIYELSKPFMYELSKPS 599
Score = 32.7 bits (71), Expect = 0.33
Identities = 8/29 (27%), Positives = 25/29 (86%)
Frame = -1
Query: 411 PAVFKQSQPTVFKQSQPTVFKQSQPTVFK 325
P++++ S+P++++ S+P++++ S+P ++K
Sbjct: 614 PSIYELSKPSIYELSKPSIYELSKPPIYK 642
Score = 32.3 bits (70), Expect = 0.43
Identities = 11/41 (26%), Positives = 30/41 (73%)
Frame = -1
Query: 432 LYNISRSPAVFKQSQPTVFKQSQPTVFKQSQPTVFKQSQTS 310
+Y IS+ P ++ +P++++ S+P++++ S+P++ + S+ S
Sbjct: 480 IYEISK-PYIYDVGKPSIYELSKPSIYELSKPSIHELSKPS 519
Score = 31.9 bits (69), Expect = 0.57
Identities = 8/39 (20%), Positives = 32/39 (82%)
Frame = -1
Query: 432 LYNISRSPAVFKQSQPTVFKQSQPTVFKQSQPTVFKQSQ 316
++ +S+ P++++ +P++++ S+P++++ S+P++++ S+
Sbjct: 600 IFELSK-PSIYELLEPSIYELSKPSIYELSKPSIYELSK 637
Score = 31.5 bits (68), Expect = 0.75
Identities = 9/36 (25%), Positives = 28/36 (77%)
Frame = -1
Query: 432 LYNISRSPAVFKQSQPTVFKQSQPTVFKQSQPTVFK 325
+Y +S+ P++++ S+P++++ S+P ++K +P +++
Sbjct: 616 IYELSK-PSIYELSKPSIYELSKPPIYKLIKPFIYE 650
Score = 31.5 bits (68), Expect = 0.75
Identities = 11/38 (28%), Positives = 29/38 (76%)
Frame = -1
Query: 432 LYNISRSPAVFKQSQPTVFKQSQPTVFKQSQPTVFKQS 319
+Y +S+ P+VF+ +P++ + S+P++F+ S+P +++ +
Sbjct: 672 IYELSK-PSVFELIKPSINELSKPSIFELSKPFIYEDA 708
Score = 31.1 bits (67), Expect = 0.99
Identities = 7/32 (21%), Positives = 27/32 (84%)
Frame = -1
Query: 411 PAVFKQSQPTVFKQSQPTVFKQSQPTVFKQSQ 316
P++++ S+P++++ +P++++ S+P++++ S+
Sbjct: 558 PSIYELSKPSIYELLEPSIYELSKPSIYELSK 589
Score = 31.1 bits (67), Expect = 0.99
Identities = 10/32 (31%), Positives = 26/32 (81%)
Frame = -1
Query: 411 PAVFKQSQPTVFKQSQPTVFKQSQPTVFKQSQ 316
P++++ S+P+VF+ +P++ + S+P++F+ S+
Sbjct: 670 PSIYELSKPSVFELIKPSINELSKPSIFELSK 701
Score = 30.7 bits (66), Expect = 1.3
Identities = 9/36 (25%), Positives = 28/36 (77%)
Frame = -1
Query: 432 LYNISRSPAVFKQSQPTVFKQSQPTVFKQSQPTVFK 325
+Y + + P +++ S+P++++ +P++++ S+P+VF+
Sbjct: 648 IYEVIK-PFIYEVSKPSIYELLEPSIYELSKPSVFE 682
Score = 29.9 bits (64), Expect = 2.3
Identities = 7/34 (20%), Positives = 27/34 (79%)
Frame = -1
Query: 411 PAVFKQSQPTVFKQSQPTVFKQSQPTVFKQSQTS 310
P++++ S+P++++ +P++++ S+P++++ + S
Sbjct: 542 PSIYELSKPSIYELIKPSIYELSKPSIYELLEPS 575
Score = 29.5 bits (63), Expect = 3.0
Identities = 7/36 (19%), Positives = 29/36 (80%)
Frame = -1
Query: 432 LYNISRSPAVFKQSQPTVFKQSQPTVFKQSQPTVFK 325
++ +S+ P +++ S+P++++ +P++++ S+P++++
Sbjct: 520 IFELSK-PFIYEVSKPSIYELLEPSIYELSKPSIYE 554
>SB_27983| Best HMM Match : PAN (HMM E-Value=0.0022)
Length = 616
Score = 34.7 bits (76), Expect = 0.081
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = +3
Query: 84 LRRNAILVLLRSTIHTFNGVIFLT*QRIVIANVNLTVHVIR--DTLTMVRARQRLVGVSD 257
+R + +V +R +H V +VI NL V IR T+ ++RA LV + D
Sbjct: 295 IRADVHVVTIRGNLHV---VTIRANLHVVIIRANLHVVTIRANSTVPIIRANLHLVTIRD 351
Query: 258 NLHVV 272
NLHVV
Sbjct: 352 NLHVV 356
>SB_48885| Best HMM Match : DUF741 (HMM E-Value=0.88)
Length = 841
Score = 31.5 bits (68), Expect = 0.75
Identities = 15/34 (44%), Positives = 16/34 (47%)
Frame = +2
Query: 320 DCLNTVGCDCLNTVGCDCLKTVGCDCLKTAGLRE 421
DC V DC V DC K V DC K LR+
Sbjct: 225 DCCKEVKYDCCKDVTNDCCKEVKYDCCKDLTLRK 258
Score = 31.5 bits (68), Expect = 0.75
Identities = 15/34 (44%), Positives = 16/34 (47%)
Frame = +2
Query: 320 DCLNTVGCDCLNTVGCDCLKTVGCDCLKTAGLRE 421
DC V DC V DC K V DC K LR+
Sbjct: 380 DCCKKVKYDCCKDVTNDCCKEVKYDCCKDLTLRK 413
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = +2
Query: 320 DCLNTVGCDCLNTVGCDCLKTVGCDCLK 403
DC V DC V DC K V DC K
Sbjct: 276 DCCKEVKYDCCKEVKYDCCKEVKYDCCK 303
Score = 27.9 bits (59), Expect = 9.2
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = +2
Query: 320 DCLNTVGCDCLNTVGCDCLKTVGCDCLK 403
DC V DC + DC K V DC K
Sbjct: 161 DCCKEVKYDCCKDLTYDCCKEVQNDCCK 188
Score = 27.9 bits (59), Expect = 9.2
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = +2
Query: 320 DCLNTVGCDCLNTVGCDCLKTVGCDCLK 403
DC + DC V DC K V DC K
Sbjct: 169 DCCKDLTYDCCKEVQNDCCKEVKYDCCK 196
Score = 27.9 bits (59), Expect = 9.2
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = +2
Query: 320 DCLNTVGCDCLNTVGCDCLKTVGCDCLK 403
DC V DC + DC K V DC K
Sbjct: 209 DCCKEVKYDCCKDLKNDCCKEVKYDCCK 236
Score = 27.9 bits (59), Expect = 9.2
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = +2
Query: 320 DCLNTVGCDCLNTVGCDCLKTVGCDCLK 403
DC + DC V DC K V DC K
Sbjct: 268 DCCKDLTNDCCKEVKYDCCKEVKYDCCK 295
Score = 27.9 bits (59), Expect = 9.2
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = +2
Query: 320 DCLNTVGCDCLNTVGCDCLKTVGCDCLK 403
DC V DC + DC K V DC K
Sbjct: 316 DCCKEVKYDCCKDLTYDCCKEVQNDCCK 343
Score = 27.9 bits (59), Expect = 9.2
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = +2
Query: 320 DCLNTVGCDCLNTVGCDCLKTVGCDCLK 403
DC + DC V DC K V DC K
Sbjct: 324 DCCKDLTYDCCKEVQNDCCKEVKYDCCK 351
Score = 27.9 bits (59), Expect = 9.2
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = +2
Query: 320 DCLNTVGCDCLNTVGCDCLKTVGCDCLK 403
DC V DC + DC K V DC K
Sbjct: 364 DCCKEVKYDCCKDLTNDCCKKVKYDCCK 391
>SB_54883| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2070
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/87 (19%), Positives = 38/87 (43%), Gaps = 5/87 (5%)
Frame = -2
Query: 740 YFIRIVYTVLYALNILLHYQLFLHYKKVHFLPDKFPYHYCLISRTLLINSINTV-----I 576
Y + +VY V+ ++++ Y + + Y + YH ++ +++ + V +
Sbjct: 147 YHVIMVYHVIMVYHVIMVYHVIMVYHVIMVYHVIMVYHVIMVYLVIMVYHVVMVYLVIMV 206
Query: 575 VLLVSTVQASQPNEQYRYQPAMSRQIN 495
L++ VQ + Q +YQ Q N
Sbjct: 207 YLVIIIVQVQKVTSQEKYQHVRDAQTN 233
>SB_52473| Best HMM Match : MMR_HSR1 (HMM E-Value=0.0026)
Length = 936
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/48 (27%), Positives = 22/48 (45%)
Frame = -1
Query: 423 ISRSPAVFKQSQPTVFKQSQPTVFKQSQPTVFKQSQTSPSGAESGAAC 280
+++SP +F PT+F PT+ PT+F + +S C
Sbjct: 772 VTQSPTLFVTQSPTLFVTQSPTLCVTQSPTLFVTQSLTLYVTQSPTLC 819
>SB_17671| Best HMM Match : 7tm_1 (HMM E-Value=0.00083)
Length = 585
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/65 (26%), Positives = 34/65 (52%)
Frame = -2
Query: 281 VSEDNVQIIGNANEPLTRTYHSQGVTYHVHGQVNISNDDPLLSQEDDTIESVDRASQQYQ 102
+S DN II + N + + + + YH + ++IS+D+ ++ D+T S + +
Sbjct: 462 ISSDNTIIIYHDNTTTSISSDNTIIIYHDNTTISISSDNTIIIYHDNTTISSNIIIIYHD 521
Query: 101 NSIAS 87
N+I S
Sbjct: 522 NTIIS 526
>SB_33848| Best HMM Match : RasGEF_N (HMM E-Value=2.3e-13)
Length = 899
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = -1
Query: 417 RSPAVFKQSQPTVFKQSQPTVFKQSQPTVFKQSQTSPSGAESGAAC 280
RSP ++S P V ++ P VF S+P + + S S E AC
Sbjct: 584 RSPRPRRRSSPNVHRERSPEVFDSSRPPLVSEEDLSLS-PELPRAC 628
>SB_26218| Best HMM Match : Disintegrin (HMM E-Value=0.85)
Length = 604
Score = 28.7 bits (61), Expect = 5.3
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = +2
Query: 308 GDVCDCLNTVGCDCLNTVGCDCLKTVGCDCLKTA 409
G CD + CD + CD K+ CD K++
Sbjct: 7 GSTCDLTKSSTCDLTKSSTCDLTKSSTCDLTKSS 40
Score = 28.7 bits (61), Expect = 5.3
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = +2
Query: 308 GDVCDCLNTVGCDCLNTVGCDCLKTVGCDCLKTA 409
G CD + CD + CD K+ CD K++
Sbjct: 256 GSTCDLTKSSTCDLTKSSTCDLTKSSTCDLTKSS 289
>SB_2908| Best HMM Match : HMG_box (HMM E-Value=1.5e-08)
Length = 324
Score = 28.7 bits (61), Expect = 5.3
Identities = 18/58 (31%), Positives = 29/58 (50%)
Frame = -2
Query: 191 GQVNISNDDPLLSQEDDTIESVDRASQQYQNSIASETAAQRALQRGLDLESQLMSEIS 18
GQ+ DD QE + + +S YQ+ I ++ AQ A+Q +E +MS +S
Sbjct: 63 GQMWRDLDDAEKQQEYNEAVKLYHSSPAYQDWITAKGRAQAAIQAQQSMERTMMSSMS 120
>SB_47830| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 767
Score = 28.7 bits (61), Expect = 5.3
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
Frame = -2
Query: 272 DNVQIIGNA-NEPLTRTYHSQG-VTYHVHGQVNISNDDPLLSQEDDTIESVDRASQQYQN 99
D+VQ+ N+ N + + ++ V HV G V + D E D + +DR +N
Sbjct: 224 DSVQVTENSYNNAVKKIVEARKRVREHVSGLVRVLRD-----HERDMVSELDRVQIDLRN 278
Query: 98 SIASETAAQRALQRGLDLESQLMSEISPR 12
SI SE +Q + L ++ + ++ R
Sbjct: 279 SILSEKKSQETHLKQLLRATESIHDVMAR 307
>SB_41175| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3259
Score = 28.7 bits (61), Expect = 5.3
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = -2
Query: 98 SIASETAAQRALQRGLDLESQLMSE 24
SI S T+ QR + RG+ +SQL+SE
Sbjct: 2851 SIDSSTSGQREMDRGVKKKSQLLSE 2875
>SB_46572| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 580
Score = 27.9 bits (59), Expect = 9.2
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +1
Query: 1 EAGDLGEISLISCDSRSKPRCRALCAAVSDAM 96
E D+G I+L+S +S S CR+ C+ ++ +
Sbjct: 382 EVPDVGRINLVSSNSSSPRSCRSECSTPAELL 413
>SB_8404| Best HMM Match : TPR_1 (HMM E-Value=0)
Length = 1981
Score = 27.9 bits (59), Expect = 9.2
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Frame = +2
Query: 8 ETLGKFHSSVVTQD--LNLAAEPSAQLSPTQCYS 103
E LG + ++V Q+ LNLA+ +L+ TQ YS
Sbjct: 1010 ELLGNYEQAIVCQEQNLNLASHMGDRLAKTQAYS 1043
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,004,028
Number of Sequences: 59808
Number of extensions: 329599
Number of successful extensions: 1229
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1198
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -