Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9f04
         (630 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   1.4  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   2.4  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   3.2  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   4.3  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    22   5.7  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   9.9  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   9.9  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 8/45 (17%), Positives = 27/45 (60%)
 Frame = -3

Query: 157  KITSHTPKNTLKLH*HTIVVNTKNYRTNSTNNIFLITTTISKHIP 23
            ++++     T++L  H+++ + ++   +S +N+  +TT ++  +P
Sbjct: 924  QVSTSAGLQTIRLSGHSVLHSAQSVVASSASNVTNVTTNLTTILP 968


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -3

Query: 190 KLNTPTHLSGSKITSHTPKNTLKLH*HTIVVNTK 89
           K+N     SG+KI+  T K+ +K +  T V N+K
Sbjct: 544 KMNETYINSGNKISLATSKSFIKANSQTEVSNSK 577


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = +2

Query: 362 YTACKAFKQLLQELGDFAGQREV--VAENLQSNVVRELHLLAKELREERKQHLNEGAKQ 532
           +++ K  +    ELG    ++ +  + E LQ NV+++ HLL    +++    L + A Q
Sbjct: 124 FSSLKDHQHQFAELGRKKLEQAIQQLQEQLQLNVIQQTHLLQTADKKKASAPLQQLALQ 182


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 217 PYAQRNRVFR*IWKLCQGEVRY 282
           P A  ++    IWK C+G++ Y
Sbjct: 188 PLAHYDQTAIEIWKQCEGKIDY 209


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +2

Query: 62  IICGICSVIFCVYHYCVS 115
           I+CGI  +   +Y+Y  S
Sbjct: 7   ILCGIAVLFLALYYYLTS 24


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 380 MLYMLYTGIHLLLSFLV 330
           MLY+L+  + L LSF V
Sbjct: 139 MLYLLFATLPLRLSFCV 155


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -3

Query: 220 MGG*VIILIPKLNTPTHLSGSKITS 146
           + G   + + K  TP HL+G+  T+
Sbjct: 24  VAGAASLTLVKAETPEHLAGTSTTA 48


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,625
Number of Sequences: 438
Number of extensions: 3771
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)