Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9f03
         (723 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_O10372 Cluster: Occlusion-derived virus envelope protei...   109   7e-23
UniRef50_Q462F3 Cluster: Orf13; n=14; Nucleopolyhedrovirus|Rep: ...   105   1e-21
UniRef50_O10370 Cluster: Uncharacterized 55.8 kDa protein; n=13;...    87   5e-16
UniRef50_Q0ILA6 Cluster: Odv-e27; n=2; Nucleopolyhedrovirus|Rep:...    69   2e-10
UniRef50_Q0N488 Cluster: P49; n=15; Nucleopolyhedrovirus|Rep: P4...    66   1e-09
UniRef50_P41701 Cluster: Occlusion-derived virus envelope protei...    57   4e-07
UniRef50_Q0ILA8 Cluster: ORF11; n=2; Nucleopolyhedrovirus|Rep: O...    54   4e-06
UniRef50_Q8QL68 Cluster: ODV-E18; n=9; Nucleopolyhedrovirus|Rep:...    45   0.002
UniRef50_O10371 Cluster: Occlusion-derived virus envelope protei...    43   0.007
UniRef50_Q9YMV5 Cluster: LdOrf-odv-e18 peptide; n=5; Nucleopolyh...    43   0.009
UniRef50_Q6QXM7 Cluster: ORF87; n=8; Granulovirus|Rep: ORF87 - A...    40   0.062
UniRef50_Q1A4L9 Cluster: ODV-E27; n=1; Choristoneura occidentali...    36   1.0  
UniRef50_Q8IK87 Cluster: Putative uncharacterized protein; n=2; ...    33   9.4  

>UniRef50_O10372 Cluster: Occlusion-derived virus envelope protein
           E27; n=12; Nucleopolyhedrovirus|Rep: Occlusion-derived
           virus envelope protein E27 - Orgyia pseudotsugata
           multicapsid polyhedrosis virus (OpMNPV)
          Length = 297

 Score =  109 bits (262), Expect = 7e-23
 Identities = 51/67 (76%), Positives = 61/67 (91%)
 Frame = +3

Query: 498 MKRVKCNKVRTVTEIVNSDEKIQKTYELAEFDLKNLSSLESYETLKIKLALSKYMAMLST 677
           MKRV+CNKVRTVTE+  ++ KI+KTY+L EFDLKNLSSLES+E  K+KLALSKYMAM++T
Sbjct: 1   MKRVRCNKVRTVTEVKPNNAKIRKTYDLNEFDLKNLSSLESFENTKVKLALSKYMAMINT 60

Query: 678 LEMTQPL 698
           LEMTQPL
Sbjct: 61  LEMTQPL 67


>UniRef50_Q462F3 Cluster: Orf13; n=14; Nucleopolyhedrovirus|Rep:
           Orf13 - Trichoplusia ni SNPV
          Length = 296

 Score =  105 bits (252), Expect = 1e-21
 Identities = 50/70 (71%), Positives = 61/70 (87%), Gaps = 3/70 (4%)
 Frame = +3

Query: 498 MKRVKCN---KVRTVTEIVNSDEKIQKTYELAEFDLKNLSSLESYETLKIKLALSKYMAM 668
           MKR KC    KVRTVTEI+NSD+K+QK Y+L EFD+KNL+SLESY+TLKIKL + KYMAM
Sbjct: 1   MKRFKCQSTPKVRTVTEIINSDDKLQKEYDLTEFDVKNLNSLESYDTLKIKLVIVKYMAM 60

Query: 669 LSTLEMTQPL 698
           L+TL++TQPL
Sbjct: 61  LNTLQLTQPL 70


>UniRef50_O10370 Cluster: Uncharacterized 55.8 kDa protein; n=13;
           Nucleopolyhedrovirus|Rep: Uncharacterized 55.8 kDa
           protein - Orgyia pseudotsugata multicapsid polyhedrosis
           virus (OpMNPV)
          Length = 484

 Score = 86.6 bits (205), Expect = 5e-16
 Identities = 41/51 (80%), Positives = 44/51 (86%)
 Frame = +3

Query: 9   KKFF*SNTXFSNTVPAYLLIRGDYESSSELKSLRDLNPWVQNTLLKLLIPD 161
           KK F     FSNTVPAYLL+RGDYES+SELKSLRDLNPWVQNTLL+LLI D
Sbjct: 421 KKIFLVKHTFSNTVPAYLLVRGDYESTSELKSLRDLNPWVQNTLLELLIVD 471


>UniRef50_Q0ILA6 Cluster: Odv-e27; n=2; Nucleopolyhedrovirus|Rep:
           Odv-e27 - Leucania separata nuclear polyhedrosis virus
           (LsNPV)
          Length = 284

 Score = 68.5 bits (160), Expect = 2e-10
 Identities = 33/61 (54%), Positives = 44/61 (72%)
 Frame = +3

Query: 516 NKVRTVTEIVNSDEKIQKTYELAEFDLKNLSSLESYETLKIKLALSKYMAMLSTLEMTQP 695
           NKVRTVTEIVN  +K+ K +EL E + KNL+SL SY+    ++ L+KY+AML  LE +Q 
Sbjct: 5   NKVRTVTEIVNGHDKLTKEFELDELNDKNLNSLVSYDNFNTRMVLAKYIAMLHMLETSQS 64

Query: 696 L 698
           L
Sbjct: 65  L 65


>UniRef50_Q0N488 Cluster: P49; n=15; Nucleopolyhedrovirus|Rep: P49 -
           Clanis bilineata nucleopolyhedrosis virus
          Length = 498

 Score = 65.7 bits (153), Expect = 1e-09
 Identities = 35/52 (67%), Positives = 39/52 (75%), Gaps = 1/52 (1%)
 Frame = +3

Query: 3   RTKKFF*SNTXFSNTVPAYLLIRGDYESSSELKSLRDL-NPWVQNTLLKLLI 155
           +T K + +   F NTVPAYLLIRGDYESS   KSL +L N WVQNTLLKLLI
Sbjct: 420 KTSKLYLTRYIFGNTVPAYLLIRGDYESS--FKSLHELKNSWVQNTLLKLLI 469


>UniRef50_P41701 Cluster: Occlusion-derived virus envelope protein
           E18; n=7; Nucleopolyhedrovirus|Rep: Occlusion-derived
           virus envelope protein E18 - Autographa californica
           nuclear polyhedrosis virus (AcMNPV)
          Length = 62

 Score = 57.2 bits (132), Expect = 4e-07
 Identities = 26/30 (86%), Positives = 28/30 (93%), Gaps = 1/30 (3%)
 Frame = +1

Query: 394 PPSATG-FMNPLNATMRANPFMNTPQRQML 480
           PP+A G F+NPLNATMRANPFMNTPQRQML
Sbjct: 33  PPNALGGFVNPLNATMRANPFMNTPQRQML 62


>UniRef50_Q0ILA8 Cluster: ORF11; n=2; Nucleopolyhedrovirus|Rep:
           ORF11 - Leucania separata nuclear polyhedrosis virus
           (LsNPV)
          Length = 470

 Score = 54.0 bits (124), Expect = 4e-06
 Identities = 26/51 (50%), Positives = 35/51 (68%)
 Frame = +3

Query: 3   RTKKFF*SNTXFSNTVPAYLLIRGDYESSSELKSLRDLNPWVQNTLLKLLI 155
           + +K F S+  F N    YLLIRGDYES S++K L+DL P VQN + +L+I
Sbjct: 412 KKQKIFISSHKFINGSSVYLLIRGDYESISDIKLLKDLTPLVQNAVFQLVI 462


>UniRef50_Q8QL68 Cluster: ODV-E18; n=9; Nucleopolyhedrovirus|Rep:
           ODV-E18 - Mamestra configurata NPV-A
          Length = 83

 Score = 44.8 bits (101), Expect = 0.002
 Identities = 21/31 (67%), Positives = 23/31 (74%), Gaps = 2/31 (6%)
 Frame = +1

Query: 394 PPSATG--FMNPLNATMRANPFMNTPQRQML 480
           PP   G  F+NPLNATMRANPF+N  QR ML
Sbjct: 53  PPGGGGNTFVNPLNATMRANPFVNPAQRNML 83


>UniRef50_O10371 Cluster: Occlusion-derived virus envelope protein
           E18; n=7; Nucleopolyhedrovirus|Rep: Occlusion-derived
           virus envelope protein E18 - Orgyia pseudotsugata
           multicapsid polyhedrosis virus (OpMNPV)
          Length = 85

 Score = 43.2 bits (97), Expect = 0.007
 Identities = 34/99 (34%), Positives = 39/99 (39%), Gaps = 1/99 (1%)
 Frame = +1

Query: 178 MIYXXXXXXXXXXXDVQSANYLNRLTPNMFLTXXXXXXXXXXXXMFVQXXXXXXXXXXXX 357
           MIY           D    NYLNRLTPN FL             +F+Q            
Sbjct: 1   MIYTDPATGATTNTDAAGNNYLNRLTPNTFLIILAVVVIVALIIIFMQSSSNGNNS---- 56

Query: 358 XXXXXXXXXXXTPPSATGFMN-PLNATMRANPFMNTPQR 471
                      + P+A   M  PLN TMRANPF+ TPQR
Sbjct: 57  -----------SSPAAVPQMGFPLNTTMRANPFVATPQR 84


>UniRef50_Q9YMV5 Cluster: LdOrf-odv-e18 peptide; n=5;
           Nucleopolyhedrovirus|Rep: LdOrf-odv-e18 peptide -
           Lymantria dispar multicapsid nuclear polyhedrosis virus
           (LdMNPV)
          Length = 88

 Score = 42.7 bits (96), Expect = 0.009
 Identities = 18/28 (64%), Positives = 20/28 (71%)
 Frame = +1

Query: 397 PSATGFMNPLNATMRANPFMNTPQRQML 480
           P    + NPLNATMRANPF+N  QR ML
Sbjct: 61  PQRYAYTNPLNATMRANPFVNNAQRSML 88


>UniRef50_Q6QXM7 Cluster: ORF87; n=8; Granulovirus|Rep: ORF87 -
           Agrotis segetum granulosis virus (AsGV) (Agrotis
           segetumgranulovirus)
          Length = 298

 Score = 39.9 bits (89), Expect = 0.062
 Identities = 20/59 (33%), Positives = 34/59 (57%)
 Frame = +3

Query: 510 KCNKVRTVTEIVNSDEKIQKTYELAEFDLKNLSSLESYETLKIKLALSKYMAMLSTLEM 686
           K    RTVTEI +++    K Y++++   KN +     E  ++ L LSKY+AM+  L++
Sbjct: 14  KVENYRTVTEITDAENSYSKRYDVSDLVNKNEAYQRQQEKREMYLMLSKYVAMVLDLKL 72


>UniRef50_Q1A4L9 Cluster: ODV-E27; n=1; Choristoneura occidentalis
           granulovirus|Rep: ODV-E27 - Choristoneura occidentalis
           granulovirus
          Length = 284

 Score = 35.9 bits (79), Expect = 1.0
 Identities = 16/50 (32%), Positives = 32/50 (64%)
 Frame = +3

Query: 510 KCNKVRTVTEIVNSDEKIQKTYELAEFDLKNLSSLESYETLKIKLALSKY 659
           K +  RTVTEIV+S+   +K +++ + + KN + L+  +  ++ L ++KY
Sbjct: 10  KVDSYRTVTEIVDSENFYKKEFDVTDLEYKNEAYLQKNKKRQLFLMVAKY 59


>UniRef50_Q8IK87 Cluster: Putative uncharacterized protein; n=2;
           Plasmodium|Rep: Putative uncharacterized protein -
           Plasmodium falciparum (isolate 3D7)
          Length = 1526

 Score = 32.7 bits (71), Expect = 9.4
 Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 6/49 (12%)
 Frame = +3

Query: 480 VDKCIKMKRVKC--NKVRTVTEIVNSDEKIQKT----YELAEFDLKNLS 608
           V K +K +++K    K++ + EIVN++E + K     Y+L  FDLKN++
Sbjct: 126 VQKILKEQKIKEPEKKIKRIQEIVNNEENLNKKFNQFYDLFCFDLKNIN 174


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 575,638,235
Number of Sequences: 1657284
Number of extensions: 9645043
Number of successful extensions: 22021
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 21350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22016
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 58677691418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)