Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc9e13
(544 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic acetyl... 56 2e-10
EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic acetyl... 54 6e-10
EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic acetyl... 54 1e-09
EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic acetyl... 52 3e-09
EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic acetyl... 52 3e-09
AF025669-1|AAB81523.1| 243|Tribolium castaneum GABA receptor su... 44 9e-07
AM292361-1|CAL23173.2| 373|Tribolium castaneum gustatory recept... 26 0.19
AM292348-1|CAL23160.2| 346|Tribolium castaneum gustatory recept... 23 2.3
U63132-1|AAB38392.1| 372|Tribolium castaneum decapentaplegic pr... 22 4.0
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept... 21 5.3
EU019712-1|ABU25224.1| 535|Tribolium castaneum chitin deacetyla... 21 7.0
>EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
3 protein.
Length = 311
Score = 56.0 bits (129), Expect = 2e-10
Identities = 38/126 (30%), Positives = 60/126 (47%), Gaps = 2/126 (1%)
Frame = +3
Query: 168 ESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEWGCSTWL-VSS 344
ES P ++ LTL + ++ E + A L + W D L WN E+G L ++
Sbjct: 25 ESEP-LEVKFGLTLQ-QIIDVDEKNQILTTNAWLNLEWNDYNLKWNESEYGGVKDLRITP 82
Query: 345 ERLWRPDVVLLNAAATTA-GDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTC 521
+LW+PDV++ N+A G + V +NGS ++ + M + +P D Q C
Sbjct: 83 NKLWKPDVLMYNSADEGFDGTFQTNVVVKHNGSCLYVPPGIFKSTCKMDITWFPFDDQHC 142
Query: 522 TFKFGS 539
KFGS
Sbjct: 143 DMKFGS 148
>EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
2 protein.
Length = 311
Score = 54.4 bits (125), Expect = 6e-10
Identities = 36/126 (28%), Positives = 59/126 (46%), Gaps = 2/126 (1%)
Frame = +3
Query: 168 ESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSS 344
ES P ++ LTL + ++ E + A L + W D L WN E+ G ++
Sbjct: 25 ESEP-LEVKFGLTLQ-QIIDVDEKNQILTTNAWLNLEWNDYNLKWNESEYGGVKDLRITP 82
Query: 345 ERLWRPDVVLLNAA-ATTAGDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTC 521
+LW+PDV++ N+A G + V +NGS ++ + + + +P D Q C
Sbjct: 83 NKLWKPDVLMYNSADEGFDGTFQTNVVVKHNGSCLYVPPGIFKSTCKIDITWFPFDDQHC 142
Query: 522 TFKFGS 539
KFGS
Sbjct: 143 DMKFGS 148
>EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
1 protein.
Length = 311
Score = 53.6 bits (123), Expect = 1e-09
Identities = 36/126 (28%), Positives = 58/126 (46%), Gaps = 2/126 (1%)
Frame = +3
Query: 168 ESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSS 344
ES P ++ LTL + ++ E + A L + W D L WN E+ G ++
Sbjct: 25 ESEP-LEVKFGLTLQ-QIIDVDEKNQILTTNAWLNLEWNDYNLKWNESEYGGVKDLRITP 82
Query: 345 ERLWRPDVVLLNAA-ATTAGDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTC 521
+LW+PDV++ N+A G + V + GS ++ + M + +P D Q C
Sbjct: 83 NKLWKPDVLMYNSADEGFDGTFQTNVVVKHGGSCLYVPPGIFKSTCKMDITWFPFDDQHC 142
Query: 522 TFKFGS 539
KFGS
Sbjct: 143 DMKFGS 148
>EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
5 protein.
Length = 311
Score = 52.0 bits (119), Expect = 3e-09
Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Frame = +3
Query: 267 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGS 440
L + W D L WN E+G L ++ +LW+PDV++ N+A G + V + GS
Sbjct: 56 LSLEWNDYNLKWNESEYGGVKDLRITPNKLWKPDVLMYNSADEGFDGTFQTNVVVKHGGS 115
Query: 441 VSWIKRLDISTPISMQLDNWPNDMQTCTFKFGS 539
++ + M + +P D Q C KFGS
Sbjct: 116 CLYVPPGIFKSTCKMDITWFPFDDQHCDMKFGS 148
>EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
4 protein.
Length = 311
Score = 52.0 bits (119), Expect = 3e-09
Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Frame = +3
Query: 267 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGS 440
L + W D L WN E+G L ++ +LW+PDV++ N+A G + V + GS
Sbjct: 56 LSLEWNDYNLKWNESEYGGVKDLRITPNKLWKPDVLMYNSADEGFDGTFQTNVVVKHGGS 115
Query: 441 VSWIKRLDISTPISMQLDNWPNDMQTCTFKFGS 539
++ + M + +P D Q C KFGS
Sbjct: 116 CLYVPPGIFKSTCKMDITWFPFDDQHCDMKFGS 148
>AF025669-1|AAB81523.1| 243|Tribolium castaneum GABA receptor
subunit protein.
Length = 243
Score = 44.0 bits (99), Expect = 9e-07
Identities = 40/152 (26%), Positives = 70/152 (46%), Gaps = 13/152 (8%)
Frame = +3
Query: 123 SLSLMIDSLLATYDRESPPD---SKIVVNLTLH-LRHANIRESESTVRILADLQMNWIDK 290
++S ++DS +YD+ P+ + V +T++ L +++ E + + + W D
Sbjct: 40 NISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFWTDP 99
Query: 291 RLSWNAGEWGCSTWLVSSE---RLWRPDVVLLNAA------ATTAGDYALRARVSNNGSV 443
RL++ G T V SE +W PD +N ATT+ ++ RV ++GS+
Sbjct: 100 RLAYGKRP-GVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFI---RVHHSGSI 155
Query: 444 SWIKRLDISTPISMQLDNWPNDMQTCTFKFGS 539
+ RL I+ M L P D Q C + S
Sbjct: 156 TRSIRLTITASCPMNLQYLPMDRQLCHIEIES 187
>AM292361-1|CAL23173.2| 373|Tribolium castaneum gustatory receptor
candidate 40 protein.
Length = 373
Score = 26.2 bits (55), Expect = 0.19
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +3
Query: 408 ALRARVSNNGSVSWIKRLDISTPISMQLDNWPND 509
A+ + N + SW + ++ + + M LDNW ND
Sbjct: 272 AIEGIIFFNLAKSWPQLIEKWSRVEMALDNWKND 305
>AM292348-1|CAL23160.2| 346|Tribolium castaneum gustatory receptor
candidate 27 protein.
Length = 346
Score = 22.6 bits (46), Expect = 2.3
Identities = 12/56 (21%), Positives = 22/56 (39%)
Frame = +3
Query: 30 SCHKMSTTYIILLPFLLTCAIASAAECENATSLSLMIDSLLATYDRESPPDSKIVV 197
+C ++ T + F TC I +CE + +D ++ R KI +
Sbjct: 174 ACISIAYTNVSTDAFFYTCLIQIETQCEIVSDTLRNLDKIVTNGFRNVAESRKIFI 229
>U63132-1|AAB38392.1| 372|Tribolium castaneum decapentaplegic
protein protein.
Length = 372
Score = 21.8 bits (44), Expect = 4.0
Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Frame = -3
Query: 455 LYPG-DGAVIRYTGAESVVPGGGC 387
LY G DG+VI E VV G GC
Sbjct: 348 LYLGSDGSVILKNYKEMVVVGCGC 371
>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
candidate 46 protein.
Length = 1451
Score = 21.4 bits (43), Expect = 5.3
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -3
Query: 110 AFCRTSYSTSEEKR*QNNIS 51
A C YST EEK Q N S
Sbjct: 1374 AVCDACYSTIEEKNLQVNES 1393
>EU019712-1|ABU25224.1| 535|Tribolium castaneum chitin deacetylase
2A protein.
Length = 535
Score = 21.0 bits (42), Expect = 7.0
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = -1
Query: 232 RMLACLKCRVRLTTILESGGDSRS 161
R+ C++C ILE GD S
Sbjct: 509 RLFTCMECPNNYPWILEPTGDGFS 532
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,170
Number of Sequences: 336
Number of extensions: 2855
Number of successful extensions: 21
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13306679
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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