Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc9e04
(682 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_30772| Best HMM Match : zf-C3HC4 (HMM E-Value=2.4e-09) 36 0.023
SB_5871| Best HMM Match : IBR (HMM E-Value=0.00018) 34 0.093
SB_6628| Best HMM Match : zf-C3HC4 (HMM E-Value=1e-09) 34 0.12
SB_15975| Best HMM Match : NHL (HMM E-Value=5e-09) 33 0.16
SB_7039| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.37
SB_106| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.37
SB_54221| Best HMM Match : zf-B_box (HMM E-Value=2.1e-17) 31 0.65
SB_53608| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.65
SB_27532| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.65
SB_36193| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.65
SB_59357| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.86
SB_56142| Best HMM Match : zf-B_box (HMM E-Value=2.9e-10) 31 0.86
SB_14351| Best HMM Match : zf-B_box (HMM E-Value=2.3e-12) 31 0.86
SB_53688| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_48302| Best HMM Match : HORMA (HMM E-Value=1.1) 31 1.1
SB_47282| Best HMM Match : RCSD (HMM E-Value=0.53) 31 1.1
SB_17727| Best HMM Match : Exo_endo_phos (HMM E-Value=2.4e-12) 31 1.1
SB_11994| Best HMM Match : ERM (HMM E-Value=0.28) 31 1.1
SB_3992| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_54849| Best HMM Match : HORMA (HMM E-Value=0.54) 31 1.1
SB_6618| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_48789| Best HMM Match : M (HMM E-Value=1.3e-10) 30 1.5
SB_32934| Best HMM Match : K_tetra (HMM E-Value=7.79963e-42) 29 2.6
SB_13020| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_5620| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_7987| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_57688| Best HMM Match : zf-C3HC4 (HMM E-Value=1.4e-08) 29 3.5
SB_57045| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_33579| Best HMM Match : Laminin_G_2 (HMM E-Value=3.2e-34) 29 3.5
SB_30093| Best HMM Match : zf-C3HC4 (HMM E-Value=1.4e-08) 29 3.5
SB_14063| Best HMM Match : zf-C3HC4 (HMM E-Value=1.4e-08) 29 3.5
SB_9017| Best HMM Match : zf-C3HC4 (HMM E-Value=7.9e-12) 29 3.5
SB_56660| Best HMM Match : zf-C2H2 (HMM E-Value=0) 29 4.6
SB_43276| Best HMM Match : zf-C2H2 (HMM E-Value=0) 28 6.1
SB_3588| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_51757| Best HMM Match : Hormone_recep (HMM E-Value=6.4e-37) 28 6.1
SB_43138| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.3e-14) 28 8.0
SB_3354| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
>SB_30772| Best HMM Match : zf-C3HC4 (HMM E-Value=2.4e-09)
Length = 207
Score = 36.3 bits (80), Expect = 0.023
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Frame = +3
Query: 210 AELKK-EPVINFKFECSVCFETYSQQSNDTCPFLIPTTCDHGFCFKCVIDLQSNAMNIPH 386
+ LKK + +N + CSVC+E +S P + T C H FC +C+ + S H
Sbjct: 53 SSLKKLQRALNDELRCSVCYEVFSD------PRTL-TACLHSFCKECLHKMLSKRSKYIH 105
Query: 387 SIVCCPLCNTQVKMWR 434
CPLC + + R
Sbjct: 106 ----CPLCRKKTAVPR 117
>SB_5871| Best HMM Match : IBR (HMM E-Value=0.00018)
Length = 843
Score = 34.3 bits (75), Expect = 0.093
Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 3/85 (3%)
Frame = +3
Query: 252 CSVCFETYSQQSNDTCPFLIPTTCDHGFCFKCVIDLQSNAMNIPHSIVCCPLCNTQVKMW 431
C +C+ Y P ++ C H FC +C++ ++ + +V CP C + +
Sbjct: 330 CPLCYTAYGTGYPQRIPRILD--CSHTFCTECIMKIK----ELQGDVVECPTCKLRTLLT 383
Query: 432 RS---LKPNAVVTCKFYKKTQERVP 497
S LK N + + QE P
Sbjct: 384 SSVDCLKKNMDILTAVFAAEQEEEP 408
>SB_6628| Best HMM Match : zf-C3HC4 (HMM E-Value=1e-09)
Length = 89
Score = 33.9 bits (74), Expect = 0.12
Identities = 19/60 (31%), Positives = 30/60 (50%)
Frame = +3
Query: 252 CSVCFETYSQQSNDTCPFLIPTTCDHGFCFKCVIDLQSNAMNIPHSIVCCPLCNTQVKMW 431
CS+C E + ND P ++P C H FC C+ +L ++ + CPLC + + W
Sbjct: 15 CSICIEHF----ND--PRVLP--CFHSFCRHCLEELAVHSEG--RGKLVCPLCKAEFQKW 64
>SB_15975| Best HMM Match : NHL (HMM E-Value=5e-09)
Length = 589
Score = 33.5 bits (73), Expect = 0.16
Identities = 34/145 (23%), Positives = 61/145 (42%), Gaps = 4/145 (2%)
Frame = +3
Query: 195 QQRMMAELKKEPVINFKFECSVCFETYSQQSNDTCPFLIPTTCDHGFCFKCVIDLQSNAM 374
++R AE VIN + C VC E + + P +P C H C KC L+ A
Sbjct: 4 KKREKAEKTLSGVINDECSCPVCLEDFLE------PKSLP-NCAHNVCRKC---LEGMAT 53
Query: 375 NIPHSIVCCPLCNTQVKM----WRSLKPNAVVTCKFYKKTQERVPAVQQYKNIIKVLQER 542
+ + CP+C + + L N ++ K + T R+ ++ + I V +E
Sbjct: 54 DSESKEIRCPVCRKESTLPEDGINGLPTNCLIV-KLLEATPGRIERLEIRRCIGAVKEE- 111
Query: 543 SVISVENSDNNCDINMENQAKIVAL 617
+ SV + +I + + + A+
Sbjct: 112 -IESVSRDERKLEIQKQERLERAAV 135
>SB_7039| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 577
Score = 32.3 bits (70), Expect = 0.37
Identities = 14/54 (25%), Positives = 26/54 (48%)
Frame = +3
Query: 252 CSVCFETYSQQSNDTCPFLIPTTCDHGFCFKCVIDLQSNAMNIPHSIVCCPLCN 413
C +C Y+Q+ P + +TC+H C +C+ + +N + CP C+
Sbjct: 76 CVICPVCYAQRPRSLFPDI--STCEHRSCIECLRQYMTIEINESRVNLTCPECS 127
>SB_106| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 362
Score = 32.3 bits (70), Expect = 0.37
Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Frame = +3
Query: 252 CSVCFETY-SQQSNDTCPFLIPTTCDHGFCFKCVIDLQSNAMNIPHSIVCCPLCNT 416
C+VC + S+ F I C H FC +C+ + + + CP+C T
Sbjct: 174 CAVCLDVVMSKPKQSERRFGILPNCIHAFCLECIRKWRKASHAEKKVVRACPICRT 229
>SB_54221| Best HMM Match : zf-B_box (HMM E-Value=2.1e-17)
Length = 455
Score = 31.5 bits (68), Expect = 0.65
Identities = 18/59 (30%), Positives = 30/59 (50%)
Frame = +3
Query: 252 CSVCFETYSQQSNDTCPFLIPTTCDHGFCFKCVIDLQSNAMNIPHSIVCCPLCNTQVKM 428
CS+C E + ND P ++P C H FC C+ +L ++ + CPLC + ++
Sbjct: 15 CSICIEHF----ND--PRVLP--CFHSFCLHCLEELAVHSEG--RGKLVCPLCKAEFQI 63
>SB_53608| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 187
Score = 31.5 bits (68), Expect = 0.65
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +3
Query: 468 FYKKTQERVPAVQQYKNIIKVLQERSVISVENSDNNCDINMENQAKIVALEAELKNEKN- 644
F + + V + + N + + + VE+SD CD + ++ LE E++ EKN
Sbjct: 34 FLSRQESTVELISESVNELYDVVVNRRVEVEDSDATCDDEKSDIDDLLDLEGEIQKEKNI 93
Query: 645 HSD 653
H+D
Sbjct: 94 HAD 96
>SB_27532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 649
Score = 31.5 bits (68), Expect = 0.65
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = +3
Query: 252 CSVCFETYSQQSNDTCPFLIPTTCDHGFCFKCVIDLQSNAMNIPHSIVCCPLCNTQVKM 428
C VC Y P L+ C H FC +CV +L + +V CP C T++++
Sbjct: 20 CPVCLGEYKN------PMLL--RCYHSFCLRCVQELLHQSGE--KGVVKCPQCRTEMEI 68
>SB_36193| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 313
Score = 31.5 bits (68), Expect = 0.65
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +3
Query: 468 FYKKTQERVPAVQQYKNIIKVLQERSVISVENSDNNCDINMENQAKIVALEAELKNEKN- 644
F + + V + + N + + + VE+SD CD + ++ LE E++ EKN
Sbjct: 34 FLSRQESTVELISESVNELYDVVVNRRVEVEDSDATCDDEKSDIDDLLDLEGEIQKEKNI 93
Query: 645 HSD 653
H+D
Sbjct: 94 HAD 96
>SB_59357| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1716
Score = 31.1 bits (67), Expect = 0.86
Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 4/87 (4%)
Frame = +3
Query: 321 CDHGFCFKCVIDLQSNAMNIPHSIVCCPLCNTQVKMWR---SLKPNAVVTCKFYKKTQER 491
C H FC C++ + + CP+C+T+V R +++P+ V+ YK
Sbjct: 1382 CLHSFCRSCIVSWLQASYH-------CPVCDTEVHKTRPFLNIRPDCVLQDIVYKLVPGL 1434
Query: 492 VPAVQQYKNIIKV-LQERSVISVENSD 569
Y+ K LQE VE D
Sbjct: 1435 YQRELNYREEFKTKLQENDPTRVEPKD 1461
>SB_56142| Best HMM Match : zf-B_box (HMM E-Value=2.9e-10)
Length = 691
Score = 31.1 bits (67), Expect = 0.86
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = +3
Query: 294 TCPFLIPTTCDHGFCFKCVIDLQSNAMNIPHSIVCCPLCNTQVKM 428
T P L+P C H +C KC+ DL S + CP C +VK+
Sbjct: 24 TDPRLLP--CLHTYCKKCLEDLVSQCQK--KGEIYCPQCRHEVKI 64
>SB_14351| Best HMM Match : zf-B_box (HMM E-Value=2.3e-12)
Length = 549
Score = 31.1 bits (67), Expect = 0.86
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = +3
Query: 300 PFLIPTTCDHGFCFKCVIDLQSNAMNIPHSIVCCPLCNTQVKM-WRSLKPNAVVTCKFYK 476
P L+P C H C KC+ D++ + CP+C T V+ L PN + K +
Sbjct: 31 PRLLP--CLHSLCKKCLKDIE----QAQEGAIACPVCLTDVECHLEELLPNVLARSKLKE 84
Query: 477 K 479
+
Sbjct: 85 R 85
>SB_53688| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 491
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Frame = +3
Query: 468 FYKKTQERVPAVQQYKNIIKVLQERSVISVENSD-NNCDINMENQAKIVALEAELKNE-K 641
F+ K QE+V A +QY N + L +S +S +C N++ K++ + K + +
Sbjct: 233 FFSKNQEKVIAYKQYSNTLSHLLNKSKKEYFHSQFISCKNNLKATWKLIGKLIQRKTKGQ 292
Query: 642 NHSDQVTSENR 674
+ ++TS NR
Sbjct: 293 SAPSRITSGNR 303
>SB_48302| Best HMM Match : HORMA (HMM E-Value=1.1)
Length = 330
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Frame = +3
Query: 468 FYKKTQERVPAVQQYKNIIKVLQERSVISVENSD-NNCDINMENQAKIVALEAELKNE-K 641
F+ K QE+V A +QY N + L +S +S +C N++ K++ + K + +
Sbjct: 72 FFSKNQEKVIAYKQYSNTLSHLLNKSKKEYFHSQFISCKNNLKATWKLIGKLIQRKTKGQ 131
Query: 642 NHSDQVTSENR 674
+ ++TS NR
Sbjct: 132 SAPSRITSGNR 142
>SB_47282| Best HMM Match : RCSD (HMM E-Value=0.53)
Length = 264
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/43 (27%), Positives = 27/43 (62%)
Frame = +3
Query: 438 LKPNAVVTCKFYKKTQERVPAVQQYKNIIKVLQERSVISVENS 566
LKP ++ YK+ +E+ PA+ + +++K ++ +S S++ S
Sbjct: 120 LKPVSIPNRCDYKRDEEKAPAMNELGSLLKTMKSKSSYSLDKS 162
>SB_17727| Best HMM Match : Exo_endo_phos (HMM E-Value=2.4e-12)
Length = 648
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Frame = +3
Query: 468 FYKKTQERVPAVQQYKNIIKVLQERSVISVENSD-NNCDINMENQAKIVALEAELKNE-K 641
F+ K QE+V A +QY N + L +S +S +C N++ K++ + K + +
Sbjct: 404 FFSKNQEKVIAYKQYSNTLSHLLNKSKKEYFHSQFISCKNNLKATWKLIGKLIQRKTKGQ 463
Query: 642 NHSDQVTSENR 674
+ ++TS NR
Sbjct: 464 SAPSRITSGNR 474
>SB_11994| Best HMM Match : ERM (HMM E-Value=0.28)
Length = 465
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/43 (27%), Positives = 27/43 (62%)
Frame = +3
Query: 438 LKPNAVVTCKFYKKTQERVPAVQQYKNIIKVLQERSVISVENS 566
LKP ++ YK+ +E+ PA+ + +++K ++ +S S++ S
Sbjct: 321 LKPVSIPNRCDYKRDEEKAPAMNELGSLLKTMKSKSSYSLDKS 363
>SB_3992| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 354
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Frame = +3
Query: 468 FYKKTQERVPAVQQYKNIIKVLQERSVISVENSD-NNCDINMENQAKIVALEAELKNE-K 641
F+ K QE+V A +QY N + L +S +S +C N++ K++ + K + +
Sbjct: 6 FFSKNQEKVIAYKQYSNTLSHLLNKSKKEYFHSQFISCKNNLKATWKLIGKLIQRKTKGQ 65
Query: 642 NHSDQVTSENR 674
+ ++TS NR
Sbjct: 66 SAPSRITSGNR 76
>SB_54849| Best HMM Match : HORMA (HMM E-Value=0.54)
Length = 330
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Frame = +3
Query: 468 FYKKTQERVPAVQQYKNIIKVLQERSVISVENSD-NNCDINMENQAKIVALEAELKNE-K 641
F+ K QE+V A +QY N + L +S +S +C N++ K++ + K + +
Sbjct: 72 FFSKNQEKVIAYKQYSNTLSHLLNKSKKEYFHSQFISCKNNLKATWKLIGKLIQRKTKGQ 131
Query: 642 NHSDQVTSENR 674
+ ++TS NR
Sbjct: 132 SAPSRITSGNR 142
>SB_6618| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 574
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +3
Query: 249 ECSVCFETYSQQSNDTCPFLIPTTCDHGFCFKCVID 356
+C VC + S+Q T P +C H FC +C+++
Sbjct: 101 QCPVCLMSLSEQKLGT-----PNSCMHVFCLECILE 131
>SB_48789| Best HMM Match : M (HMM E-Value=1.3e-10)
Length = 2478
Score = 30.3 bits (65), Expect = 1.5
Identities = 19/66 (28%), Positives = 32/66 (48%)
Frame = +3
Query: 471 YKKTQERVPAVQQYKNIIKVLQERSVISVENSDNNCDINMENQAKIVALEAELKNEKNHS 650
YK+ E QQ+ +K +RS +EN N + +A++ ++AEL N KN
Sbjct: 1277 YKRMTEEKKQFQQHVASLKSESQRSKTLLENVRNEL---TKTKAELTKVQAELLNVKNDQ 1333
Query: 651 DQVTSE 668
+ S+
Sbjct: 1334 QKAQSQ 1339
>SB_32934| Best HMM Match : K_tetra (HMM E-Value=7.79963e-42)
Length = 1207
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +3
Query: 240 FKFECSVCFETYSQQSNDTCPFLIPTTCDHGFCFKCVID 356
F C C Y + N CP + T C FC++C+ D
Sbjct: 823 FVKRCPAC--RYPVEKNGGCPHMSCTMCGGHFCWECLKD 859
>SB_13020| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 722
Score = 29.5 bits (63), Expect = 2.6
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Frame = +3
Query: 468 FYKKTQERVPAVQQYKNIIKVLQERSVISVENSD-NNCDINMENQAKIVALEAELKNE-K 641
F+ K QE+V A +QY N + L +S +S +C N++ K++ + K + +
Sbjct: 220 FFSKNQEKVIAYKQYSNTLSHLLIKSKKEYFHSQFISCKNNLKATWKLIGKLIQRKTKGQ 279
Query: 642 NHSDQVTSENR 674
+ ++TS NR
Sbjct: 280 SAPSRITSGNR 290
>SB_5620| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 937
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/53 (24%), Positives = 25/53 (47%)
Frame = +3
Query: 318 TCDHGFCFKCVIDLQSNAMNIPHSIVCCPLCNTQVKMWRSLKPNAVVTCKFYK 476
+C H C KC+ D+ + + ++ CPLC +++ + R N + K
Sbjct: 35 SCMHDLCRKCLEDMAARESS---RVIRCPLCRSEIDIPRGGVKNLPTNLRLMK 84
>SB_7987| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 466
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/57 (28%), Positives = 23/57 (40%)
Frame = +3
Query: 252 CSVCFETYSQQSNDTCPFLIPTTCDHGFCFKCVIDLQSNAMNIPHSIVCCPLCNTQV 422
C++C E +Q I T CDH FC C+ + N CP+C +
Sbjct: 160 CAICKEVLTQP--------IATPCDHYFCVLCICEWLDQTYNKSG----CPVCKASI 204
>SB_57688| Best HMM Match : zf-C3HC4 (HMM E-Value=1.4e-08)
Length = 262
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/57 (28%), Positives = 23/57 (40%)
Frame = +3
Query: 252 CSVCFETYSQQSNDTCPFLIPTTCDHGFCFKCVIDLQSNAMNIPHSIVCCPLCNTQV 422
C++C E +Q I T CDH FC C+ + N CP+C +
Sbjct: 34 CAICKEVLTQP--------IATPCDHYFCVLCICEWLDQTYNKSG----CPVCKASI 78
>SB_57045| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 362
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/60 (28%), Positives = 27/60 (45%)
Frame = +3
Query: 249 ECSVCFETYSQQSNDTCPFLIPTTCDHGFCFKCVIDLQSNAMNIPHSIVCCPLCNTQVKM 428
EC +C E + P ++P C H FC++C++ L S CP C V++
Sbjct: 15 ECPICLERFKD------PRVLP--CLHTFCYECLVGLASRYKT--EGKWPCPQCKMVVQV 64
>SB_33579| Best HMM Match : Laminin_G_2 (HMM E-Value=3.2e-34)
Length = 1071
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Frame = +3
Query: 243 KFECSVCFETYSQQSNDTCPFLIPTTCD-HGFCFK--CVIDLQSNAMNIPHSIVC 398
K+ C C++T+ S P L+ TC+ + K C ID+ P ++C
Sbjct: 397 KYTCD-CYKTFYTGSTCEMPLLLKATCEGYNLSNKSSCFIDVDGKGAQAPFHVLC 450
>SB_30093| Best HMM Match : zf-C3HC4 (HMM E-Value=1.4e-08)
Length = 301
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/57 (28%), Positives = 23/57 (40%)
Frame = +3
Query: 252 CSVCFETYSQQSNDTCPFLIPTTCDHGFCFKCVIDLQSNAMNIPHSIVCCPLCNTQV 422
C++C E +Q I T CDH FC C+ + N CP+C +
Sbjct: 160 CAICKEVLTQP--------IATPCDHYFCVLCICEWLDQTYNKSG----CPVCKASI 204
>SB_14063| Best HMM Match : zf-C3HC4 (HMM E-Value=1.4e-08)
Length = 301
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/57 (28%), Positives = 23/57 (40%)
Frame = +3
Query: 252 CSVCFETYSQQSNDTCPFLIPTTCDHGFCFKCVIDLQSNAMNIPHSIVCCPLCNTQV 422
C++C E +Q I T CDH FC C+ + N CP+C +
Sbjct: 160 CAICKEVLTQP--------IATPCDHYFCVLCICEWLDQTYNKSG----CPVCKASI 204
>SB_9017| Best HMM Match : zf-C3HC4 (HMM E-Value=7.9e-12)
Length = 203
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/60 (28%), Positives = 27/60 (45%)
Frame = +3
Query: 249 ECSVCFETYSQQSNDTCPFLIPTTCDHGFCFKCVIDLQSNAMNIPHSIVCCPLCNTQVKM 428
EC +C E + P ++P C H FC++C++ L S CP C V++
Sbjct: 15 ECPICLERFKD------PRVLP--CLHTFCYECLVGLASRYKT--EGKWPCPQCKMVVQV 64
>SB_56660| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 917
Score = 28.7 bits (61), Expect = 4.6
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -2
Query: 624 QLPKQLFLPDSPYLCHNCCRCF 559
++ K+L LP+ P+ C C +CF
Sbjct: 326 EVSKELNLPEKPHKCDECGKCF 347
>SB_43276| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 426
Score = 28.3 bits (60), Expect = 6.1
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = -2
Query: 648 CDFFRSLIQLPKQLFLPDSPYLCHNCCRCFRH 553
C + ++ ++ PY CH C +CF H
Sbjct: 127 CFTYSGALKTHLRIHTGQKPYECHECGKCFTH 158
Score = 27.9 bits (59), Expect = 8.0
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = -2
Query: 591 PYLCHNCCRCFRH 553
PY CH C +CF H
Sbjct: 202 PYKCHECGKCFTH 214
>SB_3588| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 391
Score = 28.3 bits (60), Expect = 6.1
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = -2
Query: 648 CDFFRSLIQLPKQLFLPDSPYLCHNCCRCFRH 553
C + ++ ++ PY CH C +CF H
Sbjct: 92 CFTYSGALKTHLRIHTGQKPYECHECGKCFTH 123
Score = 27.9 bits (59), Expect = 8.0
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = -2
Query: 591 PYLCHNCCRCFRH 553
PY CH C +CF H
Sbjct: 167 PYKCHECGKCFTH 179
>SB_51757| Best HMM Match : Hormone_recep (HMM E-Value=6.4e-37)
Length = 405
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +3
Query: 3 QFVAESLPISKMPRDTNNRRRHRSTPYERPTLEDLH 110
Q ES PI++ P DT RH S+P + +++ H
Sbjct: 148 QVAGESRPITRHP-DTTTDTRHHSSPQTQQLMDNQH 182
>SB_43138| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.3e-14)
Length = 1709
Score = 27.9 bits (59), Expect = 8.0
Identities = 14/53 (26%), Positives = 31/53 (58%)
Frame = +3
Query: 501 VQQYKNIIKVLQERSVISVENSDNNCDINMENQAKIVALEAELKNEKNHSDQV 659
++ Y++ IK L E+ + ++++ +NN + E K+ LE ELK ++++
Sbjct: 1314 IESYEDKIKAL-EKEISNLKDRNNNGEKVQELLHKVTYLEGELKERSVETEKL 1365
>SB_3354| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 632
Score = 27.9 bits (59), Expect = 8.0
Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
Frame = +3
Query: 315 TTCDHGFCFKCVIDLQSNAMNIPH-SIVCCPLCNTQVK-----MWRSLKPN 449
T C H FC +C+ ++ A + P+ + + CP C +++ ++ +L PN
Sbjct: 29 TPCLHSFCAECLNEI---ARSRPYQAYIACPTCKYEIRKPEGGLFNTLPPN 76
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,361,910
Number of Sequences: 59808
Number of extensions: 431108
Number of successful extensions: 1658
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 1446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1651
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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