Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9e01
         (121 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch...    24   3.2  
SPAC22E12.01 ||SPAC890.09|triose phosphate transporter |Schizosa...    23   5.6  
SPAC26F1.14c |aif1|SPAC29A4.01c|apoptosis-inducing factor homolo...    23   7.4  
SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor c...    22   9.8  

>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 677

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 5/35 (14%)
 Frame = -2

Query: 102 RNLFISKYNAIALIVTDDAHLLCNY-----HLDRV 13
           R LF+ +++ + L +T +A  LC Y     HLD+V
Sbjct: 171 RMLFVCEFSVLLLNLTIEASKLCIYLYEARHLDQV 205


>SPAC22E12.01 ||SPAC890.09|triose phosphate transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 13  NTIQVIVTE*VCVVGHDERYRVVFGNKQIAVK 108
           N + +++T  +C +G    YR+  GNK+ A K
Sbjct: 334 NIVGLVIT--LCGIGVYNYYRITKGNKKEAEK 363


>SPAC26F1.14c |aif1|SPAC29A4.01c|apoptosis-inducing factor homolog
           Aif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 575

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -2

Query: 63  IVTDDAHLLCNYH 25
           +VT D H++C +H
Sbjct: 72  VVTSDGHIVCPWH 84


>SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor
           complex subunit Rrn5|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 556

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +1

Query: 13  NTIQVIVTE*VCVVGHDERYRVVFGNKQIAVKNKK 117
           +T  +I +     + HDERY  V    ++  +NK+
Sbjct: 18  STASIIGSSEQLYMTHDERYLDVLQQYEVETENKR 52


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 370,902
Number of Sequences: 5004
Number of extensions: 3510
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 2,362,478
effective HSP length: 20
effective length of database: 2,262,398
effective search space used: 42985562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)