Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9e01
         (121 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0348 - 9233032-9233154,9233233-9233311,9233387-9233511,923...    26   3.7  
12_01_1017 - 10348198-10348326,10348412-10348532,10348746-103492...    25   6.5  
06_01_0915 - 7054701-7055809,7056062-7056359                           25   6.5  
02_04_0532 + 23711530-23711755,23712984-23713093,23713204-237152...    25   6.5  
04_02_0004 - 8430902-8431210,8431295-8431445,8431542-8431830,843...    25   8.6  
02_03_0313 - 17590109-17590148,17590254-17590382,17590479-175906...    25   8.6  

>02_02_0348 -
           9233032-9233154,9233233-9233311,9233387-9233511,
           9233597-9233734,9233802-9233993,9235269-9237209
          Length = 865

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -2

Query: 81  YNAIALIVTDDAHLLCNYHLDR 16
           + AIA ++ D  H LC +H+++
Sbjct: 299 HRAIAAVMPDSEHRLCTWHIEQ 320


>12_01_1017 -
           10348198-10348326,10348412-10348532,10348746-10349275,
           10349318-10349433,10349672-10349990,10350019-10350106,
           10350194-10350639
          Length = 582

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -2

Query: 75  AIALIVTDDAHLLCNYHLDR 16
           AIA ++ D  H LC +H+++
Sbjct: 202 AIAAVMPDSEHRLCTWHIEQ 221


>06_01_0915 - 7054701-7055809,7056062-7056359
          Length = 468

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -2

Query: 117 FFIFNRNLFISKYNAIALIVTDDAHLLCNYHLDRVVVNA 1
           + +FN      K   + +  TDDA ++ + H + V VNA
Sbjct: 41  YLLFNPVATAKKPVVVVVQATDDASVIASSHHEHVKVNA 79


>02_04_0532 +
           23711530-23711755,23712984-23713093,23713204-23715298,
           23716092-23716153,23716236-23716277,23716614-23716673,
           23716873-23717010,23717333-23717374,23717452-23717574
          Length = 965

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -2

Query: 75  AIALIVTDDAHLLCNYHLDR 16
           AIA ++ D  H LC +H+++
Sbjct: 436 AIAAVMPDSEHWLCTWHIEQ 455


>04_02_0004 -
           8430902-8431210,8431295-8431445,8431542-8431830,
           8431873-8432083,8432184-8432380,8432454-8432555,
           8432666-8433998
          Length = 863

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 9/28 (32%), Positives = 20/28 (71%)
 Frame = -2

Query: 120 FFFIFNRNLFISKYNAIALIVTDDAHLL 37
           + ++ NRN  I K +++ L++T+D+ L+
Sbjct: 71  YVWVANRNTPIKKSSSVKLVLTNDSDLV 98


>02_03_0313 -
           17590109-17590148,17590254-17590382,17590479-17590612,
           17590779-17590841,17590920-17591070,17593372-17593424,
           17593483-17593629,17593839-17594163,17594240-17594409,
           17595252-17595453,17596065-17596273,17597051-17597260,
           17597360-17597489,17599664-17600402,17600411-17600531
          Length = 940

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 49  VVGHDERYRVVFGNKQIAVK 108
           V+ HDER+  + G +Q+A K
Sbjct: 900 VITHDERFAQLIGQRQLAEK 919


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,162,460
Number of Sequences: 37544
Number of extensions: 17346
Number of successful extensions: 44
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 14,793,348
effective HSP length: 20
effective length of database: 14,042,468
effective search space used: 266806892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)