Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9d22
         (707 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_06_0127 - 11027692-11027826,11027925-11027993,11029925-110300...    29   4.8  
06_01_0309 - 2233573-2234556,2234670-2234721,2235406-2236391,223...    28   8.4  

>10_06_0127 -
           11027692-11027826,11027925-11027993,11029925-11030011,
           11030146-11030286
          Length = 143

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 584 CFAETRNVCVKIKKRNYQAIYKFYNKITF 670
           C A T + C  ++ RNY+ +Y+ Y  + F
Sbjct: 40  CLARTDHQCSFVEHRNYKVVYRRYASLFF 68


>06_01_0309 -
           2233573-2234556,2234670-2234721,2235406-2236391,
           2237790-2238050
          Length = 760

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 597 VSAKQKIPNPDYPSKDNGSNCLK 529
           VSA+   P P Y S+DN +N +K
Sbjct: 710 VSAQNNQPQPSYSSRDNQTNVIK 732


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,101,612
Number of Sequences: 37544
Number of extensions: 208379
Number of successful extensions: 335
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 335
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)