Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9d19
         (741 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF519356-1|ABP68465.1|  500|Anopheles gambiae LRIM1 protein.           23   7.5  
EF519351-1|ABP68460.1|  486|Anopheles gambiae LRIM1 protein.           23   7.5  
AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    23   9.9  

>EF519356-1|ABP68465.1|  500|Anopheles gambiae LRIM1 protein.
          Length = 500

 Score = 23.4 bits (48), Expect = 7.5
 Identities = 11/53 (20%), Positives = 26/53 (49%)
 Frame = +1

Query: 85  LNNELQEIKSILVVMYESMEKHFSNVVDEIDSLKTDTFMMLSNLXNNTIRTWD 243
           L+  LQ+   ++ + + + E+    ++  I     + ++   ++ NN IR WD
Sbjct: 408 LDGTLQQAVGLIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWD 460


>EF519351-1|ABP68460.1|  486|Anopheles gambiae LRIM1 protein.
          Length = 486

 Score = 23.4 bits (48), Expect = 7.5
 Identities = 11/53 (20%), Positives = 26/53 (49%)
 Frame = +1

Query: 85  LNNELQEIKSILVVMYESMEKHFSNVVDEIDSLKTDTFMMLSNLXNNTIRTWD 243
           L+  LQ+   ++ + + + E+    ++  I     + ++   ++ NN IR WD
Sbjct: 408 LDGTLQQAVGLIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWD 460


>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +1

Query: 166 DEIDSLKTDTFMMLSNLXNNTIRTWDAVVKNGKKISNLDE 285
           DEI+SL+  T  +   +        DA+ K  ++ + LDE
Sbjct: 294 DEINSLEEKTERLEDTISKQKRELMDALAKADERKTELDE 333


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 716,657
Number of Sequences: 2352
Number of extensions: 14947
Number of successful extensions: 37
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 76091949
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)