Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9d16
         (762 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom...    34   0.025
SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyce...    26   5.1  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    25   8.9  
SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.9  
SPAC25H1.05 |meu29||sequence orphan|Schizosaccharomyces pombe|ch...    25   8.9  
SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyc...    25   8.9  

>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1188

 Score = 33.9 bits (74), Expect = 0.025
 Identities = 15/54 (27%), Positives = 25/54 (46%)
 Frame = +2

Query: 209 TSVARRTLSPRWEHTFTYRGLKPQDLAARALELSLWDRDRLASNDFMGAVRLSL 370
           T V ++ L+P W           Q  A   + + LWD DR + +D +G  ++ L
Sbjct: 508 TRVVKQDLNPIWNEYAFIPVFPDQVKAGEKISIELWDSDRFSPDDVVGRTKIGL 561


>SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 335

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = -1

Query: 456 RSIIVCQSETSFPALSIQLTWAPMYVPVPSESRTAPMKSLE 334
           R I++C+     P LS++ TW  + V +        +K++E
Sbjct: 76  RDIVLCRIFYPSPVLSVRFTWNRLVVLIKGSIYVYNLKNME 116


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 23/74 (31%), Positives = 33/74 (44%)
 Frame = -3

Query: 727  IVLALIRILYLKNLGRVEVSKSIYKFCRSKEECQNLSHFLFTEYLELARFVN*ILNY*RK 548
            IV ++I  +YL  +  ++ + S            N S FLF  Y E A  +N   +  RK
Sbjct: 2833 IVFSMINRVYLPLVPTIQANSSA-----DSSNPPNTS-FLFRGYHETAWLINRFAHVARK 2886

Query: 547  KCL*KVCLHWLQSI 506
              L  VCL+ L  I
Sbjct: 2887 HKLPSVCLNQLTKI 2900


>SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 773

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 418 GERSFTLADNDGTSELLGRGILT 486
           G+R+  +    GT+EL+G G+LT
Sbjct: 408 GKRTSKIGKLRGTNELIGEGVLT 430


>SPAC25H1.05 |meu29||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 716 TYSNTILEKPWKSRSFKEY 660
           TYS  +L +PWK  S K +
Sbjct: 122 TYSGVLLHRPWKLFSLKPF 140


>SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 490

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +3

Query: 384 TWVPTSTGWIVRGKKFHSGRQ*WNVRT 464
           TW+P ST  ++     +S  + W++RT
Sbjct: 294 TWLPQSTSQVISSCSANSALKLWDLRT 320


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,905,377
Number of Sequences: 5004
Number of extensions: 56770
Number of successful extensions: 135
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)