Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc9d16
(762 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_40281| Best HMM Match : C2 (HMM E-Value=6.7e-39) 111 8e-25
SB_4929| Best HMM Match : C2 (HMM E-Value=2.4e-33) 97 1e-20
SB_1933| Best HMM Match : PI3_PI4_kinase (HMM E-Value=4.06377e-44) 66 2e-11
SB_2343| Best HMM Match : No HMM Matches (HMM E-Value=.) 56 2e-08
SB_2344| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 2e-06
SB_863| Best HMM Match : C2 (HMM E-Value=5.4e-36) 48 6e-06
SB_3618| Best HMM Match : C2 (HMM E-Value=4.8e-23) 46 3e-05
SB_27807| Best HMM Match : C2 (HMM E-Value=0) 46 3e-05
SB_19229| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 6e-05
SB_19231| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 5e-04
SB_23551| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.001
SB_28690| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.063
SB_11279| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.063
SB_3666| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.063
SB_30705| Best HMM Match : C2 (HMM E-Value=3.7e-07) 35 0.083
SB_3670| Best HMM Match : C2 (HMM E-Value=3.7e-07) 35 0.083
SB_40486| Best HMM Match : C2 (HMM E-Value=2.9e-05) 34 0.14
SB_20559| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.19
SB_6033| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=1.6e-37) 33 0.19
SB_3985| Best HMM Match : C2 (HMM E-Value=0) 33 0.19
SB_3986| Best HMM Match : C2 (HMM E-Value=2.9e-31) 33 0.33
SB_41604| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.58
SB_52153| Best HMM Match : C2 (HMM E-Value=1.5) 31 1.0
SB_45184| Best HMM Match : C2 (HMM E-Value=1.1e-22) 31 1.0
SB_43325| Best HMM Match : C2 (HMM E-Value=1.1e-22) 31 1.0
SB_16861| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_794| Best HMM Match : C2 (HMM E-Value=1e-23) 31 1.4
SB_39465| Best HMM Match : PDH (HMM E-Value=1.5) 30 2.4
SB_18815| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_5146| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_42639| Best HMM Match : Homeobox (HMM E-Value=1e-26) 28 7.2
SB_16205| Best HMM Match : Neur_chan_memb (HMM E-Value=1e-12) 28 7.2
SB_55925| Best HMM Match : Homeobox (HMM E-Value=1e-26) 28 7.2
SB_51861| Best HMM Match : RVT_1 (HMM E-Value=1.2e-10) 28 9.5
>SB_40281| Best HMM Match : C2 (HMM E-Value=6.7e-39)
Length = 230
Score = 111 bits (266), Expect = 8e-25
Identities = 51/115 (44%), Positives = 75/115 (65%)
Frame = +2
Query: 158 FNYSYLLPERGRLAKQKTSVARRTLSPRWEHTFTYRGLKPQDLAARALELSLWDRDRLAS 337
F +YLLP++GR +K+KT R+ L+P+W FTY + ++L R+LEL++WD DR AS
Sbjct: 117 FVKAYLLPDKGRKSKRKTPTIRKNLNPQWNFPFTYDDVTLEELMDRSLELTVWDWDRGAS 176
Query: 338 NDFMGAVRLSLGTGTYMGAHVNWMDSAGKEVSLWQTMMERPNFWVEGSLPLRPQL 502
NDF+G VRL +GT W D+ G+E++ WQ MM+ PN W + +L LR +
Sbjct: 177 NDFLGGVRLGMGT-----KQEKWDDAEGQEITAWQAMMDFPNEWHDSTLTLRSSM 226
Score = 34.3 bits (75), Expect = 0.11
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = +2
Query: 284 LAARALELSLWDRDRLASNDFMGAVRLSLGTGTYMGAHVNWMDSAGKEVSLWQTMMER 457
+ R L L++W+ DR NDF+G + L L Y + NW + + W + ER
Sbjct: 1 MLTRTLWLTVWNHDRFGHNDFLGEIMLPL--AQYDESGFNWAQPSAE----WYPLRER 52
>SB_4929| Best HMM Match : C2 (HMM E-Value=2.4e-33)
Length = 567
Score = 97.5 bits (232), Expect = 1e-20
Identities = 41/110 (37%), Positives = 66/110 (60%)
Frame = +2
Query: 173 LLPERGRLAKQKTSVARRTLSPRWEHTFTYRGLKPQDLAARALELSLWDRDRLASNDFMG 352
LLP++ + KT++ +RTL+P W++ Y L ++L R LE+S+WD D + ++F+G
Sbjct: 457 LLPDKKGKTRHKTAIIKRTLNPSWDYNLIYEELSQEELRQRVLEISIWDHDIASRDEFLG 516
Query: 353 AVRLSLGTGTYMGAHVNWMDSAGKEVSLWQTMMERPNFWVEGSLPLRPQL 502
+RL LGT W DS+ E +W TM+ R N W++ +PLRP +
Sbjct: 517 GLRLGLGTSAN-----EWDDSSKDEAQIWHTMLTRTNVWIQVVVPLRPNM 561
>SB_1933| Best HMM Match : PI3_PI4_kinase (HMM E-Value=4.06377e-44)
Length = 915
Score = 66.5 bits (155), Expect = 2e-11
Identities = 27/67 (40%), Positives = 42/67 (62%)
Frame = +2
Query: 170 YLLPERGRLAKQKTSVARRTLSPRWEHTFTYRGLKPQDLAARALELSLWDRDRLASNDFM 349
YLLP+ + K KT +A+++ +P + T Y L DL R L++++WD DR+ NDFM
Sbjct: 829 YLLPDPSKTTKLKTKIAKKSQNPTYNETLVYSNLSAADLKTRHLQVTVWDHDRVGENDFM 888
Query: 350 GAVRLSL 370
G V ++L
Sbjct: 889 GGVVINL 895
>SB_2343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 156
Score = 56.4 bits (130), Expect = 2e-08
Identities = 25/68 (36%), Positives = 46/68 (67%)
Frame = +2
Query: 167 SYLLPERGRLAKQKTSVARRTLSPRWEHTFTYRGLKPQDLAARALELSLWDRDRLASNDF 346
SYL P+ + +K++T++ ++TL+P + F Y + +LA ++LE+++WD D SNDF
Sbjct: 47 SYLKPDPQKKSKRRTNIRKKTLNPEFNEEFVY-DIAHHELAKKSLEVTVWDYDVGKSNDF 105
Query: 347 MGAVRLSL 370
+G V L++
Sbjct: 106 IGGVILNI 113
>SB_2344| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 388
Score = 50.0 bits (114), Expect = 2e-06
Identities = 20/67 (29%), Positives = 40/67 (59%)
Frame = +2
Query: 170 YLLPERGRLAKQKTSVARRTLSPRWEHTFTYRGLKPQDLAARALELSLWDRDRLASNDFM 349
+LLP + K ++ +TL+P + T TY G+ ++++++ L L ++D D + NDF+
Sbjct: 44 HLLPGASKSNKLRSHTKYKTLNPVFNETLTYYGITEEEISSKTLRLQVFDEDTIGRNDFI 103
Query: 350 GAVRLSL 370
G ++L
Sbjct: 104 GETSINL 110
>SB_863| Best HMM Match : C2 (HMM E-Value=5.4e-36)
Length = 454
Score = 48.4 bits (110), Expect = 6e-06
Identities = 23/62 (37%), Positives = 39/62 (62%)
Frame = +2
Query: 173 LLPERGRLAKQKTSVARRTLSPRWEHTFTYRGLKPQDLAARALELSLWDRDRLASNDFMG 352
LLP+ +K+KT + + +LSP + TF ++ ++ +D R L + +WD DR NDFMG
Sbjct: 140 LLPDPDNTSKKKTKIFKESLSPVFNETFEFK-IQNKD-KDRRLSIEVWDWDRTTRNDFMG 197
Query: 353 AV 358
++
Sbjct: 198 SL 199
>SB_3618| Best HMM Match : C2 (HMM E-Value=4.8e-23)
Length = 486
Score = 46.4 bits (105), Expect = 3e-05
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Frame = +2
Query: 179 PERGRLAKQKTSVARRTLSPRWEHTFTYR-GLKPQDLAARALELSLWDRDRLASNDFMGA 355
P+ G K+++ + TL+P W YR L P+ L L + L+D D +DF+G
Sbjct: 57 PDWGNSGTLKSTIIQGTLNPTWPFGEIYRFNLSPEQLKETKLSVHLYDNDPEGEDDFLGQ 116
Query: 356 VRLSLGTGTYMGAHVNW 406
V + L + + W
Sbjct: 117 VTIDLSKNDFSKVYTTW 133
>SB_27807| Best HMM Match : C2 (HMM E-Value=0)
Length = 405
Score = 46.0 bits (104), Expect = 3e-05
Identities = 23/66 (34%), Positives = 35/66 (53%)
Frame = +2
Query: 173 LLPERGRLAKQKTSVARRTLSPRWEHTFTYRGLKPQDLAARALELSLWDRDRLASNDFMG 352
LLP++ K +T V R+ L+P W FT+ G L + L + + D DR + ND +G
Sbjct: 168 LLPDKKH--KLETRVKRKNLNPVWNEVFTFEGFPHNKLMGKTLYMQVLDYDRFSRNDPIG 225
Query: 353 AVRLSL 370
V + L
Sbjct: 226 EVEIPL 231
Score = 37.9 bits (84), Expect = 0.009
Identities = 18/63 (28%), Positives = 33/63 (52%)
Frame = +2
Query: 170 YLLPERGRLAKQKTSVARRTLSPRWEHTFTYRGLKPQDLAARALELSLWDRDRLASNDFM 349
Y++ + RL K+KT++ RRT P W +F + + + ++ D DR+ N+ +
Sbjct: 299 YIMHKDRRLDKKKTTIKRRTRDPVWNESFIF-DVPLDKIRDLTFVFNVMDYDRITQNELI 357
Query: 350 GAV 358
G V
Sbjct: 358 GQV 360
>SB_19229| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 45.2 bits (102), Expect = 6e-05
Identities = 26/93 (27%), Positives = 52/93 (55%), Gaps = 1/93 (1%)
Frame = +2
Query: 173 LLPERGRLAKQKTSVARRTLSPRWEHTFTYRGLKPQDLAARALELSLWDRDRLASNDFMG 352
L+ E ++ K+KT+V +RTL+P + TFT+ + + + +L +S+ D DR+ ++ +G
Sbjct: 245 LVQEGRKIKKKKTTVKKRTLNPYYNETFTFT-VAFEKIEQTSLIISVLDYDRVGKSEMIG 303
Query: 353 -AVRLSLGTGTYMGAHVNWMDSAGKEVSLWQTM 448
V L +G + + + S + V+ W T+
Sbjct: 304 KCVVGELSSGADLRHWADMLASPRRSVAQWHTL 336
>SB_19231| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 730
Score = 41.9 bits (94), Expect = 5e-04
Identities = 21/65 (32%), Positives = 37/65 (56%)
Frame = +2
Query: 179 PERGRLAKQKTSVARRTLSPRWEHTFTYRGLKPQDLAARALELSLWDRDRLASNDFMGAV 358
P+ G + K KTS++R+T P + TF + ++ + LA L L + + DR + + +G +
Sbjct: 500 PDPGNVYKGKTSISRKTTEPYYNETFQF-SIEMEKLADAILSLLVMEVDRYSRHHVIGQI 558
Query: 359 RLSLG 373
L LG
Sbjct: 559 DLELG 563
>SB_23551| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 360
Score = 41.1 bits (92), Expect = 0.001
Identities = 17/56 (30%), Positives = 34/56 (60%)
Frame = +2
Query: 206 KTSVARRTLSPRWEHTFTYRGLKPQDLAARALELSLWDRDRLASNDFMGAVRLSLG 373
KT V ++TL+P+W+ + + ++L L++ + D D + ++D +G V +SLG
Sbjct: 39 KTEVCKKTLNPQWDSEWFRFEVDDEELQDEPLQIRIMDYDTVTAHDAIGKVNISLG 94
>SB_28690| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2179
Score = 35.1 bits (77), Expect = 0.063
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 6/56 (10%)
Frame = +2
Query: 203 QKTSVARRTLSPRWEHTFTYRGLKPQD------LAARALELSLWDRDRLASNDFMG 352
QKT + +TLSP W+ T +R ++ D ++ + ++D+D + +DFMG
Sbjct: 1289 QKTEMRAQTLSPNWDQTLVFRQVELCDRWHNIKRYTPSVVMEIYDKDPVGKDDFMG 1344
>SB_11279| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 108
Score = 35.1 bits (77), Expect = 0.063
Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Frame = +2
Query: 167 SYLLPERGRLAKQKTSVARRTLSPRWEHTFTYRGLKPQDLAARALELSLWDRDRL--ASN 340
SY+LP++ + +++T +A+ TLSP ++ F + + L R L++++ + S
Sbjct: 18 SYVLPDKSKSNRRRTDIAKNTLSPSFDEKFEWM-IPEAQLKDRTLDVTVKNDVSFFSKSK 76
Query: 341 DFMGAVRLSLG 373
MG V + LG
Sbjct: 77 TSMGQVLIDLG 87
>SB_3666| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 843
Score = 35.1 bits (77), Expect = 0.063
Identities = 18/57 (31%), Positives = 32/57 (56%)
Frame = +2
Query: 200 KQKTSVARRTLSPRWEHTFTYRGLKPQDLAARALELSLWDRDRLASNDFMGAVRLSL 370
K K+ + TL+P+W F LK + LE++++DRD + ++FMG ++ L
Sbjct: 307 KYKSKACKETLNPQWSEQF---DLKMYPDSPMVLEITVYDRD-IRKDEFMGRCQIDL 359
>SB_30705| Best HMM Match : C2 (HMM E-Value=3.7e-07)
Length = 278
Score = 34.7 bits (76), Expect = 0.083
Identities = 21/66 (31%), Positives = 33/66 (50%)
Frame = +2
Query: 173 LLPERGRLAKQKTSVARRTLSPRWEHTFTYRGLKPQDLAARALELSLWDRDRLASNDFMG 352
LLP + + K K RRT P++ TF + L +DL A+ L L+ + +A +G
Sbjct: 190 LLPAKKQRFKTKH---RRTPHPKFRETFVFDRLVKEDLYRMAVRLRLYTQSGVAKEKLVG 246
Query: 353 AVRLSL 370
+ L L
Sbjct: 247 EINLQL 252
>SB_3670| Best HMM Match : C2 (HMM E-Value=3.7e-07)
Length = 188
Score = 34.7 bits (76), Expect = 0.083
Identities = 21/66 (31%), Positives = 33/66 (50%)
Frame = +2
Query: 173 LLPERGRLAKQKTSVARRTLSPRWEHTFTYRGLKPQDLAARALELSLWDRDRLASNDFMG 352
LLP + + K K RRT P++ TF + L +DL A+ L L+ + +A +G
Sbjct: 100 LLPAKKQRFKTKH---RRTPHPKFRETFVFDRLVKEDLYRMAVRLRLYTQSGVAKEKLVG 156
Query: 353 AVRLSL 370
+ L L
Sbjct: 157 EINLQL 162
>SB_40486| Best HMM Match : C2 (HMM E-Value=2.9e-05)
Length = 698
Score = 33.9 bits (74), Expect = 0.14
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = +2
Query: 173 LLPERGRLAKQKTSVARRTLSPRWEHTFTYRGLKPQDLAARALELSLWDRDR 328
LLPER + +T V T SP+W +F Y P++ A + RDR
Sbjct: 485 LLPERRITNQFRTPVHYTTTSPKWNLSFIYSDFTPEEAARIRMSTKSCVRDR 536
>SB_20559| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 351
Score = 33.5 bits (73), Expect = 0.19
Identities = 19/62 (30%), Positives = 33/62 (53%)
Frame = +2
Query: 200 KQKTSVARRTLSPRWEHTFTYRGLKPQDLAARALELSLWDRDRLASNDFMGAVRLSLGTG 379
+ KT V +TL+P+W T T+ +D+ L ++++DRD + N F + L +
Sbjct: 256 EHKTRVCPQTLNPKWNSTMTF---TVKDMEQDVLCITVFDRDFFSPNVFYRELPLPVCCL 312
Query: 380 TY 385
TY
Sbjct: 313 TY 314
>SB_6033| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=1.6e-37)
Length = 1052
Score = 33.5 bits (73), Expect = 0.19
Identities = 16/48 (33%), Positives = 28/48 (58%)
Frame = +2
Query: 200 KQKTSVARRTLSPRWEHTFTYRGLKPQDLAARALELSLWDRDRLASND 343
+ KT V +TL+P+W T T+ +D+ L ++++DRD + ND
Sbjct: 965 EHKTRVCPQTLNPKWNSTMTF---TVKDMEQDVLCITVFDRDFFSPND 1009
>SB_3985| Best HMM Match : C2 (HMM E-Value=0)
Length = 835
Score = 33.5 bits (73), Expect = 0.19
Identities = 21/93 (22%), Positives = 40/93 (43%)
Frame = +2
Query: 143 IKDGRFNYSYLLPERGRLAKQKTSVARRTLSPRWEHTFTYRGLKPQDLAARALELSLWDR 322
+K G+ + Y + E G K +T V + L+P W TF + + +++ LWD
Sbjct: 383 VKKGKSD-PYAILEIGA-QKFRTKVKKNDLNPTWNETFE---AFVDNSEGQDIDMFLWDE 437
Query: 323 DRLASNDFMGAVRLSLGTGTYMGAHVNWMDSAG 421
D+ + +G + + + G W+ G
Sbjct: 438 DKAGKDSKLGFLSTQIASAVEQGQRDVWLPLQG 470
>SB_3986| Best HMM Match : C2 (HMM E-Value=2.9e-31)
Length = 778
Score = 32.7 bits (71), Expect = 0.33
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Frame = +2
Query: 140 EIKDGRFNYSYLLPERGRLAKQKTSVARRTLSPRWEHTFTY----RGLKPQDLAARALEL 307
E K F YLLP+R + +++T R +L+P + T Y LK +DL +E
Sbjct: 651 ENKTNPFVRLYLLPDRTKKTRRRTGAVRGSLAPSFNETIEYCVGLDQLKDRDLDIEGVEF 710
Query: 308 SLWDRD 325
+ D
Sbjct: 711 DWTNND 716
>SB_41604| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 406
Score = 31.9 bits (69), Expect = 0.58
Identities = 15/48 (31%), Positives = 28/48 (58%)
Frame = +2
Query: 200 KQKTSVARRTLSPRWEHTFTYRGLKPQDLAARALELSLWDRDRLASND 343
+ KT V +TL+P+W T T+ +D+ L ++++DRD + N+
Sbjct: 300 EHKTRVCPQTLNPKWNSTMTF---TVKDMEQDVLCITVFDRDFFSPNE 344
>SB_52153| Best HMM Match : C2 (HMM E-Value=1.5)
Length = 49
Score = 31.1 bits (67), Expect = 1.0
Identities = 15/47 (31%), Positives = 27/47 (57%)
Frame = +2
Query: 200 KQKTSVARRTLSPRWEHTFTYRGLKPQDLAARALELSLWDRDRLASN 340
+ KT V +TL+P+W T T+ +D+ L ++++DRD + N
Sbjct: 5 EHKTHVCPQTLNPKWNSTMTF---TVKDMEQDVLCITVFDRDFFSPN 48
>SB_45184| Best HMM Match : C2 (HMM E-Value=1.1e-22)
Length = 344
Score = 31.1 bits (67), Expect = 1.0
Identities = 15/47 (31%), Positives = 27/47 (57%)
Frame = +2
Query: 200 KQKTSVARRTLSPRWEHTFTYRGLKPQDLAARALELSLWDRDRLASN 340
+ KT V +TL+P+W T T+ +D+ L ++++DRD + N
Sbjct: 300 EHKTRVCPQTLNPKWNSTMTF---TVKDMEQDVLCITVFDRDFFSPN 343
>SB_43325| Best HMM Match : C2 (HMM E-Value=1.1e-22)
Length = 87
Score = 31.1 bits (67), Expect = 1.0
Identities = 15/47 (31%), Positives = 27/47 (57%)
Frame = +2
Query: 200 KQKTSVARRTLSPRWEHTFTYRGLKPQDLAARALELSLWDRDRLASN 340
+ KT V +TL+P+W T T+ +D+ L ++++DRD + N
Sbjct: 43 EHKTRVCPQTLNPKWNSTMTF---TVKDMEQDVLCITVFDRDFFSPN 86
>SB_16861| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2214
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Frame = +2
Query: 203 QKTSVARRTLSPRWEHTFTYR-----GLKPQDLAARALELSLWDRDRLASNDFMG 352
Q T V ++TL P W+ T + L+ + + L+D+D++ +DF+G
Sbjct: 1236 QMTEVKQKTLCPTWDQTLIFHVDLFDSLENIQRNPPTVVMELFDKDQVGKDDFLG 1290
Score = 28.7 bits (61), Expect = 5.5
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2
Query: 290 ARALELSLWDRDRLASNDFMGAVRLSL 370
A L + +WD D + +DF+G+ +L L
Sbjct: 1998 APCLNMQIWDNDTFSYDDFLGSCQLDL 2024
>SB_794| Best HMM Match : C2 (HMM E-Value=1e-23)
Length = 583
Score = 30.7 bits (66), Expect = 1.4
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 14/69 (20%)
Frame = +2
Query: 200 KQKTSVARRTLSPRWEHT--FTYRGLKPQDLA------------ARALELSLWDRDRLAS 337
+Q+T+V T++P W T F G+ PQ + +++ +WDRD L
Sbjct: 82 EQRTAVQYNTINPEWRETLQFEVAGV-PQLMQIDGDETSANWCMVHYIQIEVWDRDTLNR 140
Query: 338 NDFMGAVRL 364
+DFMG + +
Sbjct: 141 DDFMGRLMI 149
Score = 28.3 bits (60), Expect = 7.2
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +2
Query: 299 LELSLWDRDRLASNDFMGAVRL 364
+++ +WDRD L +DFMG + +
Sbjct: 236 IQIEVWDRDTLNRDDFMGRLMI 257
>SB_39465| Best HMM Match : PDH (HMM E-Value=1.5)
Length = 369
Score = 29.9 bits (64), Expect = 2.4
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = +2
Query: 338 NDFMGAVRLSLGTGTYMGAHVNWMDSAGKEVSLW 439
++ +G++R S + +++NWM + GKEV+ W
Sbjct: 315 DEILGSLRASKKAIETIQSNINWMKAHGKEVTKW 348
>SB_18815| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 548
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +1
Query: 370 RHRNIHGCPRQLDG*CGERSFTLADNDGTSELLGRGILTFKAPTNQLT 513
RH ++H LDG GER + + +EL+ RG L + + Q T
Sbjct: 290 RHSDMHLLSGALDGESGERGYEVKSITSEAELVARGQLLKRQSSPQQT 337
>SB_5146| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2077
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -1
Query: 495 GLKGKDPSTQKFGRSIIVCQSETSFPA 415
GLK DP + F R I+ C+SE PA
Sbjct: 749 GLKEIDPQSMPFQRYIVRCESEVDAPA 775
>SB_42639| Best HMM Match : Homeobox (HMM E-Value=1e-26)
Length = 225
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +2
Query: 629 AFFLTSTKFINTL*NFYSSKVFQV*YSNKCQY 724
A+ T T++ L NFY S QV YSN Y
Sbjct: 192 AYLPTPTRYYGLLPNFYPSSNLQVVYSNMSLY 223
>SB_16205| Best HMM Match : Neur_chan_memb (HMM E-Value=1e-12)
Length = 1286
Score = 28.3 bits (60), Expect = 7.2
Identities = 17/72 (23%), Positives = 26/72 (36%)
Frame = +2
Query: 158 FNYSYLLPERGRLAKQKTSVARRTLSPRWEHTFTYRGLKPQDLAARALELSLWDRDRLAS 337
F LLP ++ + RTL PRW Y + R +S W +
Sbjct: 186 FELERLLPGGFYHPVYRSEIVARTLDPRWSPFDIYLQKLCNEEVTREAVISCWHYSSSGA 245
Query: 338 NDFMGAVRLSLG 373
N + + R +G
Sbjct: 246 NTLIASARCPVG 257
>SB_55925| Best HMM Match : Homeobox (HMM E-Value=1e-26)
Length = 1064
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +2
Query: 629 AFFLTSTKFINTL*NFYSSKVFQV*YSNKCQY 724
A+ T T++ L NFY S QV YSN Y
Sbjct: 1031 AYLPTPTRYYGLLPNFYPSSNLQVVYSNMSLY 1062
>SB_51861| Best HMM Match : RVT_1 (HMM E-Value=1.2e-10)
Length = 1318
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 248 HTFTYRGLKPQDLAARALELSLWDRDRLASNDFMG 352
H FT +GL+P RA++ S D+ A+ F+G
Sbjct: 972 HVFTNKGLRPAPDKVRAVKKSERPDDKEAARSFLG 1006
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,854,036
Number of Sequences: 59808
Number of extensions: 387297
Number of successful extensions: 921
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 915
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -