Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc9d15
(774 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38; Eukaryo... 442 e-123
UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform; n=... 430 e-119
UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein... 215 e-112
UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55; Eukar... 386 e-106
UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2; E... 341 2e-92
UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S riboso... 231 1e-90
UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillard... 298 1e-79
UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S riboso... 297 1e-79
UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n... 296 5e-79
UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing ... 282 8e-75
UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9; Eukaryot... 270 2e-71
UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1; Encephal... 186 5e-46
UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4; Desulfu... 149 1e-34
UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1; Methano... 140 4e-32
UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12; Euryar... 140 5e-32
UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2; Methanobact... 131 2e-29
UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1; Th... 127 4e-28
UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2; Bigelowi... 122 1e-26
UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga ... 121 2e-26
UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3; Thermop... 117 4e-25
UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4; Pyrobac... 115 2e-24
UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3; Me... 113 3e-24
UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4; Euryarc... 112 1e-23
UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2; Euryarc... 111 1e-23
UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5; Sulfolo... 110 3e-23
UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1; Nanoarc... 105 9e-22
UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmenta... 105 2e-21
UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1; Methanococc... 104 3e-21
UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_030011... 102 1e-20
UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1; Picroph... 94 4e-18
UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1; Me... 91 3e-17
UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n... 87 5e-16
UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6; Halobac... 86 1e-15
UniRef50_A0RVY5 Cluster: Ribosomal protein S4E; n=2; Thermoprote... 83 6e-15
UniRef50_A5BV74 Cluster: Putative uncharacterized protein; n=1; ... 49 1e-04
UniRef50_A0BHK0 Cluster: Chromosome undetermined scaffold_108, w... 40 0.052
UniRef50_UPI000038E364 Cluster: hypothetical protein Faci_030005... 38 0.37
UniRef50_Q8BY81 Cluster: 3 days neonate thymus cDNA, RIKEN full-... 38 0.37
UniRef50_UPI0000E814A8 Cluster: PREDICTED: similar to MEGF6; n=1... 36 1.1
UniRef50_Q9KI83 Cluster: VrrB; n=9; Bacillus cereus group|Rep: V... 36 1.1
UniRef50_Q8IT76 Cluster: Alpha-2-macroglobulin precursor splice ... 36 1.5
UniRef50_Q7U147 Cluster: PROBABLE OXIDASE; n=7; Mycobacterium tu... 35 2.0
UniRef50_Q2VZ09 Cluster: Predicted SAM-dependent methyltransfera... 35 2.0
UniRef50_A0YER0 Cluster: Putative uncharacterized protein; n=1; ... 35 2.0
UniRef50_A5BNN8 Cluster: Putative uncharacterized protein; n=1; ... 35 2.0
UniRef50_A7CME0 Cluster: Putative uncharacterized protein precur... 35 2.6
UniRef50_Q9KI91 Cluster: VrrB; n=17; Bacteria|Rep: VrrB - Bacill... 34 3.4
UniRef50_A7ATI1 Cluster: Putative uncharacterized protein; n=1; ... 34 3.4
UniRef50_A6GEF6 Cluster: Hydrolase, alpha/beta fold family prote... 34 4.5
UniRef50_A0CVD9 Cluster: Chromosome undetermined scaffold_29, wh... 34 4.5
UniRef50_A6E8K7 Cluster: Putative uncharacterized protein; n=1; ... 33 6.0
UniRef50_Q5QMN1 Cluster: Putative uncharacterized protein P0419B... 33 6.0
UniRef50_Q59046 Cluster: DNA topoisomerase 1; n=6; Methanococcal... 33 6.0
UniRef50_UPI0000D5573E Cluster: PREDICTED: similar to Tyrosine-p... 33 7.9
UniRef50_A5WHY9 Cluster: TonB-dependent receptor; n=1; Psychroba... 33 7.9
>UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38;
Eukaryota|Rep: 40S ribosomal protein S4 - Drosophila
melanogaster (Fruit fly)
Length = 261
Score = 442 bits (1089), Expect = e-123
Identities = 201/248 (81%), Positives = 223/248 (89%)
Frame = +2
Query: 29 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 208
MARGPKKHLKRL APKAWMLDKLGGV+APRPSTGPHKLRE LPL+IFLRNRLKYAL G E
Sbjct: 1 MARGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAE 60
Query: 209 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 388
V KIV QRL+KVDGKVRTDPTYPAG+MDV+++EKT E FRL+YDVKGRF IHRI+ EEAK
Sbjct: 61 VTKIVMQRLVKVDGKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAK 120
Query: 389 YKFCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNL 568
YK CKVK+ G K VP+LVTHDGRTIRYPDPLI NDS+Q+DIA+ KI D+IKF+SGNL
Sbjct: 121 YKLCKVKKTQLGAKGVPFLVTHDGRTIRYPDPLIHANDSVQVDIASGKITDYIKFDSGNL 180
Query: 569 CMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPR 748
CMITGGRNLGRVGT+V+RERHPGSFDIVHIKDS GH FATRL NVFIIGKG K YISLP+
Sbjct: 181 CMITGGRNLGRVGTVVNRERHPGSFDIVHIKDSQGHVFATRLTNVFIIGKGNKPYISLPK 240
Query: 749 GKGIRLTI 772
GKG++L+I
Sbjct: 241 GKGVKLSI 248
>UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform;
n=137; Eukaryota|Rep: 40S ribosomal protein S4, X
isoform - Homo sapiens (Human)
Length = 263
Score = 430 bits (1059), Expect = e-119
Identities = 191/248 (77%), Positives = 221/248 (89%)
Frame = +2
Query: 29 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 208
MARGPKKHLKR+ APK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYALTG+E
Sbjct: 1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDE 60
Query: 209 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 388
V KI QR IK+DGKVRTD TYPAGFMDV+SI+KT E FRLIYD KGRF +HRITPEEAK
Sbjct: 61 VKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAK 120
Query: 389 YKFCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNL 568
YK CKV+++ G K +P+LVTHD RTIRYPDPLIKVND+IQ+D+ T KI DFIKF++GNL
Sbjct: 121 YKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNL 180
Query: 569 CMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPR 748
CM+TGG NLGR+G I +RERHPGSFD+VH+KD+ G++FATRL+N+F+IGKG K +ISLPR
Sbjct: 181 CMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPR 240
Query: 749 GKGIRLTI 772
GKGIRLTI
Sbjct: 241 GKGIRLTI 248
>UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein
S4, X isoform (LOC126235), mRNA; n=1; Takifugu
rubripes|Rep: similar to 40S ribosomal protein S4, X
isoform (LOC126235), mRNA - Takifugu rubripes
Length = 291
Score = 215 bits (525), Expect(2) = e-112
Identities = 99/119 (83%), Positives = 107/119 (89%)
Frame = +2
Query: 32 ARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEV 211
ARGPKKHLKR+ APK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYALTG+EV
Sbjct: 2 ARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEV 61
Query: 212 LKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 388
KI QR IK+DGKVRTD TYP GFMDV+SI+KT E FRLIYDVKGRFT+HRIT EEAK
Sbjct: 62 KKICMQRFIKIDGKVRTDITYPTGFMDVISIDKTGEHFRLIYDVKGRFTVHRITAEEAK 120
Score = 214 bits (523), Expect(2) = e-112
Identities = 89/129 (68%), Positives = 114/129 (88%)
Frame = +2
Query: 386 KYKFCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGN 565
+YK CKVK++ G K +P+LVTHD RTIRYPDPLIKVND++++D+ T KI DFIKF++ N
Sbjct: 152 QYKLCKVKKILIGTKGIPHLVTHDARTIRYPDPLIKVNDTVRIDLDTGKITDFIKFDTSN 211
Query: 566 LCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLP 745
+CM+TGG NLGR+G I +RERHPGSFD+VH+KDSTG++FATRL+N+F+IGKG K ++SLP
Sbjct: 212 MCMVTGGANLGRIGVITNRERHPGSFDVVHVKDSTGNSFATRLSNIFVIGKGNKPWVSLP 271
Query: 746 RGKGIRLTI 772
RGKGIRLTI
Sbjct: 272 RGKGIRLTI 280
>UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55;
Eukaryota|Rep: 40S ribosomal protein S4-2 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 262
Score = 386 bits (949), Expect = e-106
Identities = 175/248 (70%), Positives = 208/248 (83%)
Frame = +2
Query: 29 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 208
MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT E
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60
Query: 209 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 388
V+ I+ QR I+VDGKVRTD TYPAGFMDVVSI KTNE FRL+YD KGRF +H I EEAK
Sbjct: 61 VISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAK 120
Query: 389 YKFCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNL 568
+K CKV+ + G K +PYL T+DGRTIRYPDPLIK ND+I+LD+ KI++FIKF+ GN+
Sbjct: 121 FKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNV 180
Query: 569 CMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPR 748
M+TGGRN GRVG I +RE+H GSF+ +HI+DSTGH FATRL NV+ IGKGTK ++SLP+
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPK 240
Query: 749 GKGIRLTI 772
GKGI+LTI
Sbjct: 241 GKGIKLTI 248
>UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2;
Entamoeba histolytica HM-1:IMSS|Rep: 40S ribosomal
protein S4 - Entamoeba histolytica HM-1:IMSS
Length = 326
Score = 341 bits (837), Expect = 2e-92
Identities = 150/245 (61%), Positives = 191/245 (77%)
Frame = +2
Query: 29 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 208
MARGP+ HLKRLNAP WML KLGG +AP+PS GPH ++ECLPL++ LRNRL YAL G E
Sbjct: 1 MARGPRHHLKRLNAPHHWMLSKLGGTFAPKPSHGPHGMKECLPLILILRNRLNYALNGRE 60
Query: 209 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 388
V IVK R IK+DGK+RTD YP GFMDV+SI +T E FRL+Y+ K RF + +T E+AK
Sbjct: 61 VTMIVKNRTIKIDGKIRTDTRYPVGFMDVLSIPRTKENFRLMYNTKRRFCLVPLTAEQAK 120
Query: 389 YKFCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNL 568
+K CK+++ G +PY+VTHDGRTIRYP P ++ ND+I+L++ T KI+DF+KF+ GN
Sbjct: 121 FKLCKIEKRVLGTGAIPYIVTHDGRTIRYPHPELQANDTIKLNLETGKIVDFVKFDIGNT 180
Query: 569 CMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPR 748
M+ GG +GRVG IV RE HPGSF+IVHIKD+ G+TF TRLNNVF+IGKGT+ ++LP
Sbjct: 181 AMMIGGNGMGRVGVIVKREVHPGSFEIVHIKDAKGNTFTTRLNNVFVIGKGTETLVNLPL 240
Query: 749 GKGIR 763
KGI+
Sbjct: 241 DKGIK 245
>UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=3; Eutheria|Rep: PREDICTED:
similar to 40S ribosomal protein S4, X isoform - Canis
familiaris
Length = 240
Score = 231 bits (564), Expect(2) = 1e-90
Identities = 98/145 (67%), Positives = 122/145 (84%)
Frame = +2
Query: 338 DVKGRFTIHRITPEEAKYKFCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLD 517
D KGRF +HRITPEEAKYK KV+++ G K +P+LVTHD RTIRYPDPLIK+ND+IQ+D
Sbjct: 76 DTKGRFAVHRITPEEAKYKLGKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKMNDTIQID 135
Query: 518 IATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLN 697
+ T KI DF KF++GNLCM+TGG NLGR+G I +RE HPGSFD+VH+KD+ G++FATRL+
Sbjct: 136 LETGKITDFFKFDTGNLCMVTGGTNLGRIGVITNRENHPGSFDVVHVKDANGNSFATRLS 195
Query: 698 NVFIIGKGTKAYISLPRGKGIRLTI 772
N+F+IGKG +ISLP GKGIR TI
Sbjct: 196 NIFVIGKGNIPWISLPHGKGIRFTI 220
Score = 126 bits (303), Expect(2) = 1e-90
Identities = 57/75 (76%), Positives = 63/75 (84%)
Frame = +2
Query: 29 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 208
MA P+KHLK + APK WMLDKL GV+AP PSTGPHKLRECLPL+IFLRNRLKYALTG+E
Sbjct: 1 MAHSPRKHLKHVAAPKHWMLDKLTGVFAPHPSTGPHKLRECLPLIIFLRNRLKYALTGDE 60
Query: 209 VLKIVKQRLIKVDGK 253
V KI Q IK+DGK
Sbjct: 61 VKKIRMQHFIKMDGK 75
>UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillardia
theta|Rep: 40S ribosomal protein S4 - Guillardia theta
(Cryptomonas phi)
Length = 257
Score = 298 bits (731), Expect = 1e-79
Identities = 135/245 (55%), Positives = 183/245 (74%)
Frame = +2
Query: 29 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 208
M+RG KKH KRLNAPK W+L+KLGG++APR S+GPHK + +PLVI +RN+LKY+ E
Sbjct: 1 MSRGIKKHYKRLNAPKKWLLNKLGGIWAPRSSSGPHKKQNSIPLVIVIRNKLKYSTNQRE 60
Query: 209 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 388
L I+K+ I VDGKVR D +PAG MDV+SI+ T E +R++YD G F +HRIT +E+
Sbjct: 61 SLNILKKNEIYVDGKVRADKNFPAGVMDVISIKTTKENYRVLYDNVGHFFLHRITIKESM 120
Query: 389 YKFCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNL 568
+K CKV RV+ G K +PY+VTHDGRTIR+P+ LIK NDSI LD+ K++DFIKF G+L
Sbjct: 121 FKLCKVIRVSIGSKGIPYIVTHDGRTIRFPNLLIKSNDSIVLDLLNNKVIDFIKFSIGSL 180
Query: 569 CMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPR 748
C++ G N+GR+G ++ GS IV +KD G +F+T+ N+F+IGKGTK++ISLPR
Sbjct: 181 CVVIKGSNIGRIGVFINTIGGQGSDSIVCLKDFNGSSFSTQTKNLFVIGKGTKSFISLPR 240
Query: 749 GKGIR 763
+G+R
Sbjct: 241 FRGLR 245
>UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=1; Macaca mulatta|Rep:
PREDICTED: similar to 40S ribosomal protein S4, X
isoform - Macaca mulatta
Length = 244
Score = 297 bits (730), Expect = 1e-79
Identities = 142/242 (58%), Positives = 181/242 (74%)
Frame = +2
Query: 20 LSNMARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALT 199
++ +A GPK+HLKR+ A + WMLDKL GV+A RPSTGPHKLRECLP IFLRNRLKYALT
Sbjct: 9 ITAVAFGPKQHLKRVAALQHWMLDKLTGVFAARPSTGPHKLRECLPH-IFLRNRLKYALT 67
Query: 200 GNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPE 379
G+EV KI Q IKVDGK+RTD P MDV+SI+K E F LIY + RF +HRITPE
Sbjct: 68 GDEVKKICMQWFIKVDGKIRTDNNLPYWIMDVISIDKMGEDFCLIYGINRRFALHRITPE 127
Query: 380 EAKYKFCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFES 559
E KYK CK++++ K +P+LV HD T+R+PD LIKVND+IQ+D+ T KI +KF++
Sbjct: 128 EVKYKLCKMRKIFVRAKGIPHLVIHDIHTVRHPDSLIKVNDTIQIDLETGKI-TALKFDT 186
Query: 560 GNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYIS 739
GNLC++TGG N GR+G I +RERHP SFD H+KD+ ++F+ +F+I KG K +IS
Sbjct: 187 GNLCLVTGGGNWGRIGVITNRERHPVSFDTFHVKDANSNSFSI----IFVIDKGNKPWIS 242
Query: 740 LP 745
LP
Sbjct: 243 LP 244
>UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n=4;
Trichomonas vaginalis G3|Rep: 40S ribosomal protein
S4-C, putative - Trichomonas vaginalis G3
Length = 269
Score = 296 bits (726), Expect = 5e-79
Identities = 139/257 (54%), Positives = 184/257 (71%)
Frame = +2
Query: 2 SFSI*YLSNMARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNR 181
SFS L M R + HLKRL AP W+L K G +A PSTGPHKLRECLP+ IFLR+R
Sbjct: 6 SFSWSVLFLMPRCQRFHLKRLTAPHHWLLAKSAGKFASHPSTGPHKLRECLPINIFLRDR 65
Query: 182 LKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTI 361
LKYALT E + IVK+RL+KVDGKVRT+ YP G MDV+ + K+NELFR+IYD KGRF +
Sbjct: 66 LKYALTAKEAVAIVKRRLVKVDGKVRTNYRYPTGLMDVIELGKSNELFRIIYDCKGRFCV 125
Query: 362 HRITPEEAKYKFCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMD 541
H I +EA +K +V + G K +P++VTHDGRTI Y DP ++V+D+++ +I T ++
Sbjct: 126 HHIEAKEASFKLLRVNQFKIGAKGIPHVVTHDGRTISYVDPSVRVHDALKFNIKTGEVES 185
Query: 542 FIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKG 721
IKF+ G++ M+T G N+GRVGTI E+ SFDIVH+KD++G FATR+ NVF+IG+
Sbjct: 186 VIKFKVGDVAMVTAGGNVGRVGTIQKIEKQMASFDIVHLKDTSGAVFATRIMNVFVIGEN 245
Query: 722 TKAYISLPRGKGIRLTI 772
ISLP +G+R +I
Sbjct: 246 EHPLISLPAREGVRPSI 262
>UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing
protein; n=1; Tetrahymena thermophila SB210|Rep:
Ribosomal family S4e containing protein - Tetrahymena
thermophila SB210
Length = 370
Score = 282 bits (691), Expect = 8e-75
Identities = 142/278 (51%), Positives = 183/278 (65%), Gaps = 31/278 (11%)
Frame = +2
Query: 32 ARGPKKHLKRLNAPKAWMLD-------------------------KLGGVY----APRPS 124
ARGPKKHLKR+NAPK+WML+ KL +Y A RPS
Sbjct: 83 ARGPKKHLKRINAPKSWMLNKLGGIWVITFFAFRLRKNDFITTIPKLKFIYFKKQATRPS 142
Query: 125 TGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV--KQRLIKVDGKVRTDPTYPAGFMDVV 298
GPHKLRE LPL + L+ RL YAL G +V I+ K++ + VDGKVR D YP G MDVV
Sbjct: 143 QGPHKLRESLPLSVLLKERLNYALNGRDVTLILNDKEQNVFVDGKVRRDKGYPTGLMDVV 202
Query: 299 SIEKTNELFRLIYDVKGRFTIHRITPEEAKYKFCKVKRVATGPKNVPYLVTHDGRTIRYP 478
IEKT++ FR++YD KGRF + ++ EEAKYK KV A GP +PY+VTHD RTIR+P
Sbjct: 203 RIEKTDQSFRILYDTKGRFVLKSLSKEEAKYKLLKVTAKAIGPNQIPYIVTHDSRTIRFP 262
Query: 479 DPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHI 658
+P IK+ D+++ D+ KI +F ESGN+C I G N+GRVG I E+H GSFDI H+
Sbjct: 263 NPEIKIGDTLKYDLVNNKIENFAHLESGNVCYIQQGNNIGRVGIIQHIEKHQGSFDICHV 322
Query: 659 KDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGIRLTI 772
KD+ G+ FATRL N+F++G+G K++I LP G G+R TI
Sbjct: 323 KDAKGNAFATRLGNIFVLGQGKKSWIELPSGDGVRETI 360
>UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9;
Eukaryota|Rep: 40S ribosomal protein S4 - Leishmania
major
Length = 273
Score = 270 bits (663), Expect = 2e-71
Identities = 127/244 (52%), Positives = 164/244 (67%), Gaps = 1/244 (0%)
Frame = +2
Query: 44 KKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 223
KKHLKRL APK WML KL GV+APRP GPHKLRECLPL++ +RNRLKYAL E I+
Sbjct: 3 KKHLKRLYAPKDWMLSKLTGVFAPRPRPGPHKLRECLPLLVIIRNRLKYALNAREGEMIL 62
Query: 224 KQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKFCK 403
+Q L+ VD R D YPAGFMDVV I KT + FRL+YDVKGRF + ++ EA+ K K
Sbjct: 63 RQGLVHVDNHPRRDGKYPAGFMDVVEIPKTGDRFRLMYDVKGRFALVNLSEAEAQIKLMK 122
Query: 404 VKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITG 583
V + T VP VTHDG IRYPDP + D+I ++ K +D IK G ++TG
Sbjct: 123 VVNLYTATGRVPVAVTHDGHRIRYPDPHTSIGDTIVYNVKEKKCVDLIKNRQGKAVIVTG 182
Query: 584 GRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKG-TKAYISLPRGKGI 760
G N GR+G IV E HPG+F+I H+KD++G FATR N+F+IGK +++P+ +G+
Sbjct: 183 GANRGRIGEIVKVECHPGAFNIAHLKDASGAEFATRAANIFVIGKDLNNLQVTVPKQQGL 242
Query: 761 RLTI 772
R+ +
Sbjct: 243 RMNV 246
>UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S4 -
Encephalitozoon cuniculi
Length = 268
Score = 186 bits (453), Expect = 5e-46
Identities = 94/246 (38%), Positives = 153/246 (62%), Gaps = 1/246 (0%)
Frame = +2
Query: 29 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 208
M G + HLKR APK+WMLDK GG +A P++GPHK EC+PL + L+YA E
Sbjct: 1 MPTGHRDHLKRKTAPKSWMLDKQGGTFALMPASGPHKKTECIPLGYLISRFLRYASNFKE 60
Query: 209 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 388
+ I+ ++ IKV+G+VRT+ +P G DVVSIEKT E FR++Y+V +F +HRI+ EEA
Sbjct: 61 LSIILAEKNIKVNGRVRTNSHFPVGLFDVVSIEKTGEHFRVLYNVHKKFHLHRISSEEAS 120
Query: 389 YKFCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNL 568
Y+ KV + + +PY+V+ G +IR+ DP I + +I++ T+K++++I +
Sbjct: 121 YRLTKVTKKYEN-QGIPYIVSSCGLSIRFCDPAIDLGYTIKISNETSKVIEYIVPGPDKV 179
Query: 569 CMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTK-AYISLP 745
++ G+ GRVG +++ G + + D G+TF+ + +IG+ ++ +I+LP
Sbjct: 180 IFVSRGKARGRVG-VINTISTQGKETVYGMTDFAGNTFSCTSKSCILIGESSENIWITLP 238
Query: 746 RGKGIR 763
+ +GIR
Sbjct: 239 KERGIR 244
>UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4;
Desulfurococcales|Rep: 30S ribosomal protein S4e -
Aeropyrum pernix
Length = 253
Score = 149 bits (360), Expect = 1e-34
Identities = 93/252 (36%), Positives = 139/252 (55%), Gaps = 11/252 (4%)
Frame = +2
Query: 29 MAR-GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGN 205
MAR G ++ LK L AP+ W + + +A +P GPH + LPL++ +RN L YA T
Sbjct: 1 MARMGGQRRLKALAAPRFWPILRKEYKWAVKPRPGPHPAEKSLPLLLIVRNVLGYAQTAR 60
Query: 206 EVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLI-YDVKGRFTIHRITPEE 382
E K++ + +VDG VR D +P GFMDV+ + T E FR++ Y VK F +H I EE
Sbjct: 61 EARKLISEGHFRVDGVVRKDYKFPVGFMDVIEVVDTGEKFRMLPYPVK-FFKLHPIPEEE 119
Query: 383 AKYKFCKVKRVATGPKNVPYLVTHDGRTI--RYPDP------LIKVNDSIQLDIATTKIM 538
K +++ T L HDGR I R DP + + D++ + + +I
Sbjct: 120 GDLKPVRIENKTTVKGGHVQLNLHDGRNILVRVKDPRNPVEDVYRTMDTLLITVPGQEIK 179
Query: 539 DFIKFESGNLCMITGGRNLGRVGTIVSRERHPG-SFDIVHIKDSTGHTFATRLNNVFIIG 715
IKF G + +I GGRN+GRVG + S ++ G +V ++D++G+ F T L+ VF+IG
Sbjct: 180 GHIKFGEGAIAIIVGGRNVGRVGVVKSVQKGWGRKRTLVTLEDASGNLFQTSLDYVFVIG 239
Query: 716 KGTKAYISLPRG 751
+ ISLP G
Sbjct: 240 L-DRPVISLPEG 250
>UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S4e -
Methanopyrus kandleri
Length = 260
Score = 140 bits (339), Expect = 4e-32
Identities = 84/243 (34%), Positives = 127/243 (52%), Gaps = 16/243 (6%)
Frame = +2
Query: 38 GPKKHLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 214
GPK+H+KRL AP AW + K GG +APRP GPH + +PL+I +R+ L YA E
Sbjct: 7 GPKRHVKRLAAPYAWPIPRKEGGKFAPRPYPGPHTMDTSVPLLILVRDMLGYADYAREAR 66
Query: 215 KIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYK 394
KI+ + I VDG VR +P +P G MDVV I +T + +R++ + R + I+ EEA+ K
Sbjct: 67 KIITRGEIYVDGVVRKEPKFPVGIMDVVEIPRTGDRYRVVMNEHHRLDVVPISEEEARVK 126
Query: 395 FCKVKRVATGPKNVPYLVTHDGRT--IRYPDP------LIKVNDSIQLDI------ATTK 532
C++K + HDG+ + DP + V DS+ L++ + K
Sbjct: 127 VCRIKNKTYVRGGNLQITMHDGKNWLVEIEDPTDPKEDVYSVGDSLVLELPEPDSGESWK 186
Query: 533 IMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPG-SFDIVHIKDSTGHTFATRLNNVFI 709
++D I FE G GR+ G VG +V + G D++ +++ G F T +
Sbjct: 187 VVDHIPFEEGVWVYAMTGRHSGEVGRVVEIQTFEGPQEDLITVENPEGDQFQTTKGRLIA 246
Query: 710 IGK 718
IGK
Sbjct: 247 IGK 249
>UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanococcus maripaludis
Length = 244
Score = 140 bits (338), Expect = 5e-32
Identities = 83/238 (34%), Positives = 126/238 (52%), Gaps = 10/238 (4%)
Frame = +2
Query: 35 RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 214
+GP+KHLKRL AP W L + + RPS GPH + + LPL++ +R+ LKYA E
Sbjct: 4 KGPRKHLKRLAAPANWQLPRKVKTFTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAREAK 63
Query: 215 KIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYK 394
KI++ I +DG R + +PAG MDV+SI + +E + +++D GR ++ + ++ K
Sbjct: 64 KIIQTGKILIDGLKRKEYKHPAGLMDVLSIPEMDETYLVLFDESGRISLKK--TDKTDVK 121
Query: 395 FCKV--KRVATGPKNVPYLVTHDGR--------TIRYPDPLIKVNDSIQLDIATTKIMDF 544
CK+ K V G N+ L HDGR + + + K DS+ + I I
Sbjct: 122 LCKIVNKTVVKG-GNI-QLNLHDGRNQIVKVSDAAKAEEDVYKTGDSVLISIPEQSIAGH 179
Query: 545 IKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGK 718
+ F G L ITGG+++G IV E DIV +++ G F T VFI+G+
Sbjct: 180 VAFGEGKLAYITGGKHVGEFAKIVEVENRALYSDIVTLENKDGEKFKTVKPYVFIVGQ 237
>UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2;
Methanobacteriaceae|Rep: Ribosomal protein S4e -
Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM
861)
Length = 242
Score = 131 bits (317), Expect = 2e-29
Identities = 76/239 (31%), Positives = 123/239 (51%), Gaps = 4/239 (1%)
Frame = +2
Query: 38 GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLK 217
G +KHLK APK W + + +PS G H + L L + +R+ LK A E +
Sbjct: 5 GSRKHLKTYKAPKTWPIHPKEDTWTVKPSAGSHSIENSLSLTLVIRDILKLADNSREAKR 64
Query: 218 IVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKF 397
I+ + VDG+V D +P GFMD++ I KT E++R++ D KGR +++I EE K
Sbjct: 65 IINSGNVLVDGRVIKDYKFPVGFMDIIEIPKTGEVYRVLLDKKGRLQLNKI--EENDSKL 122
Query: 398 CKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMI 577
CK+ +T + HDG+ + + V D I L + +I + + + G +I
Sbjct: 123 CKIVNKSTIKGGKIQVNLHDGKNVIIDENDYNVGDVIDLKVPDHEINEVFELKEGACVLI 182
Query: 578 TGGRNLGRVGT----IVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISL 742
TGG++ G +GT IV+ +P + + I++S F T + F++G+ A ISL
Sbjct: 183 TGGKHTGELGTVSEIIVNESSNPNT---IIIENSAKDEFLTLKDYAFVVGEDAPA-ISL 237
>UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1;
Thermofilum pendens Hrk 5|Rep: Ribosomal protein S4E,
central - Thermofilum pendens (strain Hrk 5)
Length = 251
Score = 127 bits (306), Expect = 4e-28
Identities = 76/242 (31%), Positives = 121/242 (50%), Gaps = 9/242 (3%)
Frame = +2
Query: 20 LSNMARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALT 199
+ +G +HL+R AP W + + V+ +PS GPH L +P+ I LR+ YA T
Sbjct: 1 MGRKVKGSLRHLRRSVAPPFWPIKRKEYVWTVKPSPGPHSLLSSIPIGIVLRDVFGYAKT 60
Query: 200 GNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPE 379
E +I+ R+I+VDG+V TD +P G MDV+ I + +R++ D + I PE
Sbjct: 61 MKEARRILASRVIEVDGRVVTDYKFPVGLMDVLHIIPEEKYYRVVPDPARKLRFVEIKPE 120
Query: 380 EAKYKFCKVKRVATGPKNVPYLVTHDGRTI-------RYPDPL-IKVNDSIQLDIATTKI 535
EA YK +++R T HDGR + Y + K D++ + I I
Sbjct: 121 EAGYKLAQIRRKMTVKNGDLQFTLHDGRNVLIRKGSEAYSTAISYKTYDALLITIPRQSI 180
Query: 536 MDFIKFESGNLCMITGGRNLGRVGTI-VSRERHPGSFDIVHIKDSTGHTFATRLNNVFII 712
+ + FE G L ++ GRN+G +G I ++ S +V ++D++G T L V +
Sbjct: 181 VSHVPFEVGTLAIVVDGRNVGFMGRINAIQQVFKRSRALVELEDASGAKSRTILQYVLPV 240
Query: 713 GK 718
GK
Sbjct: 241 GK 242
>UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2;
Bigelowiella natans|Rep: 40S ribosomal protein S4 -
Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 242
Score = 122 bits (293), Expect = 1e-26
Identities = 64/238 (26%), Positives = 118/238 (49%)
Frame = +2
Query: 29 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 208
MA+G KKH KR+++ K G++ + S+GPH + + L+ ++ A E
Sbjct: 1 MAKGIKKHQKRISSNTMIKYKKKLGIFNTKISSGPHSKVKSVSLLNIIKKFFHLADNNQE 60
Query: 209 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 388
K+VK + V+GK +P MD +S N+ +R++ G+ T++ I E
Sbjct: 61 AQKVVKTGFLYVNGKKCLSHKFPISLMDTISFPLANKHYRVLLSKAGKLTVYEINQNEKD 120
Query: 389 YKFCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNL 568
K CKV ++ ++T D R ++ IKV DS+ + +I+ +KFE G+L
Sbjct: 121 LKICKVIKIINASSKNKIIITDDLRELKINYAKIKVEDSLLIKTINDEIVYALKFEVGSL 180
Query: 569 CMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISL 742
C+IT G++LG + I + ++H++ G + +++ +IG+ + +SL
Sbjct: 181 CLITRGKHLGTIAVIKEIRKTKSLRKMIHLEKIDGKKLTKKCSDLLVIGESKTSILSL 238
>UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga
maquilingensis IC-167|Rep: Ribosomal protein S4E -
Caldivirga maquilingensis IC-167
Length = 237
Score = 121 bits (291), Expect = 2e-26
Identities = 70/226 (30%), Positives = 110/226 (48%), Gaps = 3/226 (1%)
Frame = +2
Query: 50 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 229
HL+R +P+ W +++ G ++ +PS GPH +PL + LR+ YA T E I+ +
Sbjct: 3 HLRRSTSPEWWPVERKGAPWSIKPSPGPHPANSSIPLAVLLRDVFHYAKTLREARLIIGK 62
Query: 230 RLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKFCKVK 409
+KVDGKVR D YP G MDV+ + NE +R+I D RI EA K C+++
Sbjct: 63 GYVKVDGKVRRDYKYPVGLMDVIELTPINEYYRIIPDPVNFLRPIRIDKSEAGVKVCRIE 122
Query: 410 RVATGPKNVPYLVTHDGRTI---RYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMIT 580
L HDGR I + + S+ +++ K+MD+ + +
Sbjct: 123 DKTMVKAGKIQLNLHDGRNIIVDQDEGRKYETLGSVVVNLEDGKLMDYYPMQPNQYVIAF 182
Query: 581 GGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGK 718
G N+GR GT+++ R D + + F T LN + +IGK
Sbjct: 183 NGVNVGRHGTLINWVRSFRKRDAIATVKAKDSEFRTVLNYLLVIGK 228
>UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3;
Thermoplasma|Rep: 30S ribosomal protein S4e -
Thermoplasma acidophilum
Length = 235
Score = 117 bits (281), Expect = 4e-25
Identities = 72/231 (31%), Positives = 115/231 (49%), Gaps = 1/231 (0%)
Frame = +2
Query: 56 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 235
KRL + + + + P P+ G H + + L+ +R+ LK + E +I+ L
Sbjct: 6 KRLMVSRQVKIPRKTYFWGPTPNPGMHPKDQSVTLLSIIRDYLKLSDKEREAARILANGL 65
Query: 236 IKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKFCKVKRV 415
+KVDGK + + GFMDV+ I E +R++Y+ +G + + T E A K KV+
Sbjct: 66 VKVDGKTVREKKFAVGFMDVIEIN--GESYRVVYNDQGALVLMKETKERASMKLLKVRSK 123
Query: 416 ATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNL 595
P N L THDGRT D KV D + + KI + IK + GN IT G ++
Sbjct: 124 VIAPGNRIQLGTHDGRTFITDDKSKKVGDVWAVSVPDMKISEIIKMQPGNKAYITAGSHV 183
Query: 596 GRVGTIVSRERHPG-SFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLP 745
+ GTI E G S ++VH ++ F+T ++VF+IG +++ P
Sbjct: 184 NQTGTISKIEAKEGSSANLVHFQEG----FSTIKDHVFMIGSSKFSFVLSP 230
>UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4;
Pyrobaculum|Rep: 30S ribosomal protein S4e - Pyrobaculum
aerophilum
Length = 238
Score = 115 bits (276), Expect = 2e-24
Identities = 70/192 (36%), Positives = 98/192 (51%), Gaps = 4/192 (2%)
Frame = +2
Query: 50 HLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 226
HL+R AP W + K GGV+ RPS GPH L LPL + +R+ LKYA T +E I+
Sbjct: 3 HLRRTLAPAWWPIPRKKGGVWVVRPSPGPHSLAYSLPLALIIRDVLKYAKTMHEARYIIS 62
Query: 227 QRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKFCKV 406
+ +KVDG VR D +P G MDV+ I T E++R++ D + + I+ EEA K +V
Sbjct: 63 RGYVKVDGVVRRDYKFPVGLMDVIEIVPTGEVYRVVPDADKYYNLLPISTEEAALKLLRV 122
Query: 407 KRVATGPKNVPYLVTHDGR---TIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMI 577
+ L HDGR T IK DS+ D+ I I + G ++
Sbjct: 123 EGKTMVKGGRIQLHFHDGRNLITTLEAGKQIKTFDSVLYDLRNKAIKAHIPLKLGVNAVV 182
Query: 578 TGGRNLGRVGTI 613
G N+G GT+
Sbjct: 183 IHGSNVGFSGTL 194
>UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3;
Methanomicrobiales|Rep: Ribosomal protein S4E, central -
Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498
/ JR1)
Length = 242
Score = 113 bits (273), Expect = 3e-24
Identities = 75/235 (31%), Positives = 113/235 (48%), Gaps = 7/235 (2%)
Frame = +2
Query: 47 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 226
K+LKRL AP +W + K + + + GPH LP+ ++LR + A +EV KI+
Sbjct: 3 KYLKRLVAPGSWHIPKKVQKFVMKTAPGPHNAG-ALPVGVWLREHIGLAQNASEVKKILH 61
Query: 227 QRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKFCKV 406
QR + V+G+ D G D+VSI K + +R+ DVKG I E AK + CK+
Sbjct: 62 QRDVLVNGRACKDSRMGLGVFDIVSIPKLGKHYRIQLDVKGNLVAIEIPAESAKTRLCKI 121
Query: 407 KRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATT-----KIMDFIKFESGNLC 571
+ T L G + D K DS+ + + T +I+D + GN+
Sbjct: 122 RNKTTVKGGKVQLNFAFGANV-LADNTYKAKDSVVVTLGTDGEDRFRIVDHFPYAEGNVA 180
Query: 572 MITGGRNLGRVGTIVSRERHPGSF--DIVHIKDSTGHTFATRLNNVFIIGKGTKA 730
MI GG++ G+VG IV R S ++ DS G F T VF++G+ A
Sbjct: 181 MIVGGKHSGKVGRIVEIIRTASSVPNHVILTDDSAGERFETIEEYVFMVGRSAIA 235
>UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanosarcina mazei (Methanosarcina frisia)
Length = 235
Score = 112 bits (269), Expect = 1e-23
Identities = 69/224 (30%), Positives = 108/224 (48%), Gaps = 1/224 (0%)
Frame = +2
Query: 50 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 229
H KRL+ PK+W + + G + GPH LPL + +R+ LK E +I+ +
Sbjct: 3 HQKRLSVPKSWKVGRKGNKWISTTRPGPHSQARSLPLGLIIRDVLKLVDNNREGKRILSE 62
Query: 230 RLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKFCKVK 409
+ VDG R D +P G DV+++ NE +R++ D KGR ++++ E K C++
Sbjct: 63 GKVLVDGISRKDLRFPVGLFDVITLPLVNEAYRMLQDEKGRLVLYKLN-ETNVNKLCRIN 121
Query: 410 RVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGR 589
T L +DG I + DS+ L I ++ +KFE GNL M+ GG+
Sbjct: 122 NKTTVKGGKIQLNLNDGTNILGSND-YGTKDSLILSIPDKHVVKHLKFEVGNLAMVIGGQ 180
Query: 590 NLGRVGTIVS-RERHPGSFDIVHIKDSTGHTFATRLNNVFIIGK 718
+ G G I+ RE + V I T F T + V +IG+
Sbjct: 181 HSGETGKIMEIREVKSSRHNTVMISGET--DFETIEDYVIVIGE 222
>UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2;
Euryarchaeota|Rep: 30S ribosomal protein S4E -
Uncultured methanogenic archaeon RC-I
Length = 234
Score = 111 bits (268), Expect = 1e-23
Identities = 69/227 (30%), Positives = 108/227 (47%)
Frame = +2
Query: 50 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 229
HLKR+ AP+ W + + + +P G H +PLV+ LR+ LK A +E+ KI+ +
Sbjct: 5 HLKRVAAPRTWPITRKTSKWVAKPMPGAHSEERGMPLVVVLRDLLKVADNTSEIKKILHE 64
Query: 230 RLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKFCKVK 409
+ VDGKVR D Y G D +SI N +R++ + G+F H + +A K CK+
Sbjct: 65 GKVLVDGKVRKDYRYTVGMFDTISIPAINANYRVVIGMDGKF--HLVPVTDASAKICKIV 122
Query: 410 RVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGR 589
L HDG T+ + K DS+ L + KI + G+L M+T G+
Sbjct: 123 NKTALRGGKIQLNLHDGTTMIASND-YKTKDSVILKMPERKIDQHFTYAVGSLVMVTEGK 181
Query: 590 NLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKA 730
+ G +G + + S + + F T VF+IGK + A
Sbjct: 182 HSGEIGKVKEIKVVRSSAPNTVVITTPEGDFETIEQYVFVIGKDSPA 228
>UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5;
Sulfolobaceae|Rep: 30S ribosomal protein S4e -
Sulfolobus acidocaldarius
Length = 244
Score = 110 bits (265), Expect = 3e-23
Identities = 77/231 (33%), Positives = 110/231 (47%), Gaps = 8/231 (3%)
Frame = +2
Query: 50 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 229
H+ R AP + K + R GPHK++E +PL I L+ LK T E +I+
Sbjct: 3 HITRFEAPWFLKVGKKEYKWIIRSRAGPHKIQESVPLAILLKYYLKAVDTTREAKRIIFD 62
Query: 230 RLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKFCKVK 409
+ VDGKVR D YP G MDVV I + R+I D T I+ E+AKYKF ++
Sbjct: 63 GKVLVDGKVRRDYKYPVGLMDVVEIPSADLRVRIIPDNVRYLTTINISREDAKYKFVRIM 122
Query: 410 RVATGPKNVPYLVTHDGRTIRYP-DPLIKVN----DSIQLDIATTKIMDFIKFESGNLCM 574
T V L DGR I + L + N ++++++ KI + G M
Sbjct: 123 NKTTLKSGVLQLNLEDGRNILLKGEELSQYNLPTLTTLKIELPEQKITTAYTIKEGVYAM 182
Query: 575 ITGGRNLGRVGTI--VSRERHPG-SFDIVHIKDSTGHTFATRLNNVFIIGK 718
I GGRN G G I + ++ + +V ++ G TF T L NV IG+
Sbjct: 183 IIGGRNAGLHGKISKIQLAKYKRIKYSLVTLEGKDGSTFQTNLINVMAIGE 233
>UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S4e -
Nanoarchaeum equitans
Length = 234
Score = 105 bits (253), Expect = 9e-22
Identities = 60/192 (31%), Positives = 100/192 (52%), Gaps = 2/192 (1%)
Frame = +2
Query: 44 KKHLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKI 220
K+HL+ L P+ W + K G + +PS GPH +P+ ++LR+ L A EV +
Sbjct: 6 KRHLRSLAVPRTWPVPRKSRGYWIVKPSPGPHSKEFAMPIAVWLRDYLGLAENMREVRYL 65
Query: 221 VKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKFC 400
+ + VDG+ D +P G DV++I + NE +R++ D +G+ + +I EEA K+
Sbjct: 66 LNNGKVLVDGRPIKDYKFPVGLFDVLAIPEINEYYRVLLDERGKLYLKKIDKEEANIKYG 125
Query: 401 K-VKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMI 577
K +++V+ + Y +T DGRT D K + + +I KI + I E I
Sbjct: 126 KIIRKVSVRGGKIQYTLT-DGRTF-LGDNSYKTHYGVVYEIPNFKIREVIPLEKDRKAYI 183
Query: 578 TGGRNLGRVGTI 613
G++ GR+G I
Sbjct: 184 IRGKHTGRIGVI 195
>UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmental
samples|Rep: Ribosomal protein S4 - uncultured marine
group II euryarchaeote DeepAnt-JyKC7
Length = 232
Score = 105 bits (251), Expect = 2e-21
Identities = 66/224 (29%), Positives = 107/224 (47%), Gaps = 2/224 (0%)
Frame = +2
Query: 50 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 229
H+KRL P++W L + ++ +P+ G H C+PL + LR+ L A E +++
Sbjct: 5 HMKRLTMPRSWPLTRKTDIWVQKPNPGGHSDEMCMPLGVILRDVLDLAHNLREAKRMLAT 64
Query: 230 RLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKFCKVK 409
R + VDG++ TD G MDV+++ + + FR I DV G+ I+ + A K C+V
Sbjct: 65 RQVLVDGRIETDLGRGVGLMDVLTVGE--DSFRCILDVNGKLRYRSISDKAAASKLCRVM 122
Query: 410 RVATGPKNVPYLVTHDGRTIRYPD-PLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGG 586
+T + HDGR I D L D++ + + + F G +TGG
Sbjct: 123 GKSTITDGKTQIHLHDGRNILVSDAKLYDSGDTLVISLPDQSVAGHHPFSKGATAYLTGG 182
Query: 587 RNLGRVGTIVSRE-RHPGSFDIVHIKDSTGHTFATRLNNVFIIG 715
++G +VSR+ + + V D F T + VFIIG
Sbjct: 183 SHIGITAKVVSRDIKRSSKPNEVQFPD-----FGTVADYVFIIG 221
>UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1;
Methanococcoides burtonii DSM 6242|Rep: Ribosomal
protein S4E - Methanococcoides burtonii (strain DSM
6242)
Length = 236
Score = 104 bits (249), Expect = 3e-21
Identities = 56/188 (29%), Positives = 94/188 (50%)
Frame = +2
Query: 50 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 229
H KR++ PK+W + K + GPH + +PL + LR+ L E +++ +
Sbjct: 4 HQKRISVPKSWQISKKSNKWITSTRPGPHNRLQSIPLAVILRDMLGVVDNRAEAKRVLSE 63
Query: 230 RLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKFCKVK 409
+ VDG R D +P G MD+++I N +R++ D K R ++++ A K C+++
Sbjct: 64 GNVLVDGVARKDLRFPVGLMDIITIPLNNVEYRVMLDGKSRLVLNKLDGTGAD-KLCRIE 122
Query: 410 RVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGR 589
+ + + +DG I DSI L + K++ IK+E GNL MI GG
Sbjct: 123 GKTSIKEGKIQMRLNDGVNI-IGSNNYNTKDSIILSVPDKKVVKHIKYEVGNLAMIVGGS 181
Query: 590 NLGRVGTI 613
+ G VG+I
Sbjct: 182 HAGEVGSI 189
>UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_03001139;
n=1; Ferroplasma acidarmanus fer1|Rep: hypothetical
protein Faci_03001139 - Ferroplasma acidarmanus fer1
Length = 241
Score = 102 bits (244), Expect = 1e-20
Identities = 63/222 (28%), Positives = 113/222 (50%), Gaps = 2/222 (0%)
Frame = +2
Query: 56 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 235
K + A + + + ++ P+ H + +P++I LR+ LK E+ +I+ +
Sbjct: 7 KIMMASRKLKIPRKTNFWSVTPTPATHSKEDSIPMLIALRDYLKLGDKEREITRILNNNM 66
Query: 236 IKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKFCK-VKR 412
+KVDG++ D +P GFMDV+SI+ + ++YD KG+ I + P K K VK+
Sbjct: 67 VKVDGRIVKDRRFPVGFMDVLSIDTLENDYIIVYDRKGKLVIRQNAPGNKGLKLFKVVKK 126
Query: 413 VATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRN 592
G + L HDG+TI I +D + + I +I + +K G+ ITGG +
Sbjct: 127 TIIGTGKI-QLGFHDGKTIVTDRKDINTSDVLLMKIPDLEIENVLKIAEGDKVFITGGSH 185
Query: 593 LGRVGTIVSRERHPGSF-DIVHIKDSTGHTFATRLNNVFIIG 715
+G + TI S E S ++V++ + F+T + +F++G
Sbjct: 186 VGELATIKSIEVKKSSVKNMVYLNEG----FSTIKDYMFVVG 223
>UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1;
Picrophilus torridus|Rep: 30S ribosomal protein S4e -
Picrophilus torridus
Length = 234
Score = 93.9 bits (223), Expect = 4e-18
Identities = 70/231 (30%), Positives = 110/231 (47%), Gaps = 1/231 (0%)
Frame = +2
Query: 56 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 235
K + AP+ + + +A G HK +PL+I LR+ LK E+ +I+ L
Sbjct: 6 KIMMAPRKLKIARKSRFWAVNSLPGSHKKDSSIPLLIALRDYLKLGDKEREITRILTNSL 65
Query: 236 IKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKFCKVKRV 415
+ VDGKV + GFMD +++ + L + YD KG+ I E K +VK
Sbjct: 66 VMVDGKVVKERRRGIGFMDTLTVSGNDYL--VSYDRKGKLVILPKPGETKGLKLLRVKGK 123
Query: 416 ATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNL 595
+ HDG T+ IK DS+ + I +I+D +KF GN ITGG ++
Sbjct: 124 TYVKGGRIQISFHDGSTMVTDRKDIKNGDSVLVKIPKKEIVDVLKFAPGNRVFITGGSHV 183
Query: 596 GRVGTIVSRE-RHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLP 745
G + TI S E + ++VH+ + F+T + VF++G K S+P
Sbjct: 184 GEIATIKSIEIKSSSGENMVHMNEG----FSTVSSYVFVMG-SPKYTFSMP 229
>UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1;
Methanocorpusculum labreanum Z|Rep: Ribosomal protein
S4E, central - Methanocorpusculum labreanum (strain ATCC
43576 / DSM 4855 / Z)
Length = 239
Score = 91.1 bits (216), Expect = 3e-17
Identities = 62/224 (27%), Positives = 107/224 (47%), Gaps = 4/224 (1%)
Frame = +2
Query: 56 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 235
KR+ AP AW + + Y S+GPH LP+ I+LR+ +++AL EV KI+ R
Sbjct: 5 KRMTAPDAWQIARKESKYVVSTSSGPHD-GSALPIGIWLRDHMQFALNTKEVRKILHDRQ 63
Query: 236 IKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKFCKVKRV 415
+ ++G + TD D++S K ++ + ++ D KGR + I+ + AK + KV
Sbjct: 64 VLLNGHIVTDEHIGIDVFDIISFPKIDKHYMILVDEKGRHNEYEISADAAKLQLVKVANK 123
Query: 416 ATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIA---TTKIMDFIKFESGNLCMITGG 586
T + G + K DS+ + IA + + GN+ +I GG
Sbjct: 124 TTIKGGKTQINLTSGANF-IGEENCKGKDSLVIGIAGDDRFAVQQHFPYAVGNMAIIIGG 182
Query: 587 RNLGRVGTIVSRERHPGSF-DIVHIKDSTGHTFATRLNNVFIIG 715
++ + G +V S + V I+D+ G+ F T + V++IG
Sbjct: 183 QHTMKTGKLVEILVQESSLPNRVIIEDADGNKFETIEDYVYMIG 226
>UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 17 contig 1, DNA
sequence - Ostreococcus tauri
Length = 197
Score = 87.0 bits (206), Expect = 5e-16
Identities = 55/161 (34%), Positives = 85/161 (52%)
Frame = -3
Query: 772 DGEADALAARQRDVRLRALADYEHVVQPRGEGVSRGVLDVHNVEGAGMSLAGHDGAHTPQ 593
DGE D LA +RD RL A D EHV + R + ++ GVL VHN EG + LA D
Sbjct: 33 DGELDTLALGKRDHRLVARTDGEHVRRARRKLLTGGVLQVHNFEGTDVLLAALDHPDATG 92
Query: 592 VTASRDHTQVPRLKLDEVHNLRSCNV*LDGIVDFDKWVWIADGAAIMRYQVRNILRSGRH 413
V + DH Q ++LD + +L +V +G+ D + + +GAA+++ R+ L
Sbjct: 93 VVTTGDHAQSADVELDRIGDLVRRDVDHNGVTLLDHGIRVTNGAAVVQTDARHALVPELL 152
Query: 412 TLDFTKLVLSLLRGDTVDCESALNIID*TKQFISLLN*DNI 290
+LVL D V ES+L ++D + FI+L + D++
Sbjct: 153 APHLAQLVLRFDSLDAVHNESSLGVVDEPEVFIALFDGDDV 193
>UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6;
Halobacteriaceae|Rep: 30S ribosomal protein S4E -
Haloarcula marismortui (Halobacterium marismortui)
Length = 234
Score = 85.8 bits (203), Expect = 1e-15
Identities = 59/223 (26%), Positives = 97/223 (43%), Gaps = 2/223 (0%)
Frame = +2
Query: 50 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 229
H KRL+ P +W +++ + + GPH +PL+I LR+ L YA E + +
Sbjct: 4 HQKRLSVPNSWPVERKTATFTVKAGAGPHG-ESGVPLLIVLRDVLGYADNRKEARYALNE 62
Query: 230 RLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKFCKVK 409
+ ++GK +D P G D+++ + E +R+ GR + I P+ A+ K K+
Sbjct: 63 DNVLINGKAISDEERPVGMFDILAFTEREEYYRVFPGEGGRLALTAIDPDAAQSKLGKIV 122
Query: 410 RVATGPKNVPYLVTHDGRT-IRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGG 586
L HDG T I D DSI + +++ ++E G L G
Sbjct: 123 TKTHVSGGDVQLGLHDGETLIVEDDQTYDAGDSIVVGNEDGEVVAHFEYEEGALVTAVDG 182
Query: 587 RNLGRVGTIVSRERHPGSF-DIVHIKDSTGHTFATRLNNVFII 712
+ G VG + + PGS + V + G F T V +I
Sbjct: 183 AHAGEVGEVEEIQVTPGSAQNNVIVSQDEGEGFETVEEYVVVI 225
>UniRef50_A0RVY5 Cluster: Ribosomal protein S4E; n=2;
Thermoprotei|Rep: Ribosomal protein S4E - Cenarchaeum
symbiosum
Length = 238
Score = 83.4 bits (197), Expect = 6e-15
Identities = 53/189 (28%), Positives = 82/189 (43%)
Frame = +2
Query: 47 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 226
K LKR AP W + + G + G H +P + LR+ L T E K +
Sbjct: 8 KKLKRQMAPSFWGITRKGKRFVVTVHPGAHSKHRSIPSAVLLRDTLGAVSTLREAKKSIY 67
Query: 227 QRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKFCKV 406
++VDG RT + G MDVV + T +++R++ +I E K C+V
Sbjct: 68 SGNVEVDGVKRTSLHHGIGLMDVVELGGTGDIYRMVPSGGAILKPVKIEAAEKDRKICRV 127
Query: 407 KRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGG 586
+ + HDGR++ D + V DS + + KI+ + E G ++T G
Sbjct: 128 TSKTSISGGRTQIGFHDGRSL-ISDEKVSVGDSCLVQVPGQKILKVARMEKGAHAVVTRG 186
Query: 587 RNLGRVGTI 613
N G GTI
Sbjct: 187 TNAGSTGTI 195
>UniRef50_A5BV74 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 186
Score = 48.8 bits (111), Expect = 1e-04
Identities = 26/78 (33%), Positives = 43/78 (55%)
Frame = -3
Query: 772 DGEADALAARQRDVRLRALADYEHVVQPRGEGVSRGVLDVHNVEGAGMSLAGHDGAHTPQ 593
D + D L R+R RL LA+ EH+ Q + + G+L+V ++G + L D ++T
Sbjct: 99 DRQLDXLTLRKRYPRLCPLANDEHIAQTSCKFMPSGILNVDGLKGPLVLLPVLDDSNTAP 158
Query: 592 VTASRDHTQVPRLKLDEV 539
V ++ H +P +K DEV
Sbjct: 159 VPSTSHHDNIPNIKFDEV 176
>UniRef50_A0BHK0 Cluster: Chromosome undetermined scaffold_108,
whole genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_108,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 246
Score = 40.3 bits (90), Expect = 0.052
Identities = 25/76 (32%), Positives = 42/76 (55%)
Frame = +2
Query: 122 STGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVS 301
+T P +L + + L + ++ K L E L I KQ+ +KV+ K + DPT+P D S
Sbjct: 100 NTQPRELLKVVNLDPKIMDKEKKKL--EEELDINKQQKVKVEHKKQLDPTFPRNDFDKFS 157
Query: 302 IEKTNELFRLIYDVKG 349
IE +++ L+ + KG
Sbjct: 158 IEDMDQVLNLLSNYKG 173
>UniRef50_UPI000038E364 Cluster: hypothetical protein Faci_03000514;
n=1; Ferroplasma acidarmanus fer1|Rep: hypothetical
protein Faci_03000514 - Ferroplasma acidarmanus fer1
Length = 317
Score = 37.5 bits (83), Expect = 0.37
Identities = 21/63 (33%), Positives = 32/63 (50%)
Frame = -3
Query: 322 QFISLLN*DNIHKSSRISRVSPNFPINLYEALFHNFQDFVSGQSILQTIPQENHQGQALA 143
Q I+ N +NI + I + N P E LFH F DFVSG ++ I + + + +A
Sbjct: 50 QVINTYNDENILEIINIPDIKYNIPDAEKEILFHKFIDFVSGNKLISGIMKIMYLDRKIA 109
Query: 142 QLV 134
Q +
Sbjct: 110 QFI 112
>UniRef50_Q8BY81 Cluster: 3 days neonate thymus cDNA, RIKEN
full-length enriched library, clone:A630024D08
product:hypothetical Histidine-rich region containing
protein, full insert sequence; n=1; Mus musculus|Rep: 3
days neonate thymus cDNA, RIKEN full-length enriched
library, clone:A630024D08 product:hypothetical
Histidine-rich region containing protein, full insert
sequence - Mus musculus (Mouse)
Length = 139
Score = 37.5 bits (83), Expect = 0.37
Identities = 24/58 (41%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +1
Query: 601 CGHHRVPRETSR-LLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHH 771
C HH R LLR + G H RH +R H RQ EGV R+GHP HH
Sbjct: 55 CAHHLSADPAERVLLRGVSPPGEALGHQRHY--ERQHVRQHVEGVGQHGERRGHPAHH 110
>UniRef50_UPI0000E814A8 Cluster: PREDICTED: similar to MEGF6; n=1;
Gallus gallus|Rep: PREDICTED: similar to MEGF6 - Gallus
gallus
Length = 1119
Score = 35.9 bits (79), Expect = 1.1
Identities = 27/68 (39%), Positives = 29/68 (42%), Gaps = 7/68 (10%)
Frame = -2
Query: 764 GGCP--CRAAARCTPSCPCRL*TRCSTSWRRCVPWSP*CAQ----CRR-SRDVSRGTRWC 606
GGC C C CR R RRC PWSP CAQ C + RDV +G C
Sbjct: 128 GGCEHDCVQLTANQHQCRCRRQYRLREDGRRCAPWSP-CAQRNGGCMQLCRDV-QGAARC 185
Query: 605 PHAPSYGL 582
P Y L
Sbjct: 186 ECRPGYRL 193
>UniRef50_Q9KI83 Cluster: VrrB; n=9; Bacillus cereus group|Rep: VrrB
- Bacillus anthracis
Length = 115
Score = 35.9 bits (79), Expect = 1.1
Identities = 20/46 (43%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Frame = +1
Query: 646 HCAHQGLHGTHLRHEVEQRVHNRQGHEGVH----LAAARQGHPPHH 771
H HQG HG H H +Q+VH+ GH +H L QGH HH
Sbjct: 41 HHHHQGHHGHHGHH--QQQVHH-HGHHHIHPQAILYQTHQGHQGHH 83
Score = 34.3 bits (75), Expect = 3.4
Identities = 19/42 (45%), Positives = 20/42 (47%)
Frame = +1
Query: 646 HCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHH 771
H HQG HG H H H+ QGH G H QGH HH
Sbjct: 17 HQGHQGHHG-HQGH------HHHQGHHGHHGHHHHQGHHGHH 51
>UniRef50_Q8IT76 Cluster: Alpha-2-macroglobulin precursor splice
variant 1; n=3; Chelicerata|Rep: Alpha-2-macroglobulin
precursor splice variant 1 - Ornithodoros moubata (Soft
tick)
Length = 1494
Score = 35.5 bits (78), Expect = 1.5
Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Frame = +2
Query: 302 IEKTNELFRL-IYDVKGRFTIHRIT-PEEAKYKFCKVKRVATGPKNVPYLVTHDGRT--I 469
++ N+L + +YD+ R I+R T P ++ Y +C+ K +TGP+ ++ RT +
Sbjct: 637 LKDDNQLTKAKVYDLLKRLDINRYTWPRQSSYDYCRRKSSSTGPRYARRVIWPGPRTSNV 696
Query: 470 RYPDPLIKVNDS 505
Y D + ++S
Sbjct: 697 EYVDSITAFDES 708
>UniRef50_Q7U147 Cluster: PROBABLE OXIDASE; n=7; Mycobacterium
tuberculosis complex|Rep: PROBABLE OXIDASE -
Mycobacterium bovis
Length = 504
Score = 35.1 bits (77), Expect = 2.0
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = -2
Query: 161 PGASTRATCGDRLTVSVHTHRQVCPTSMLWERLSASNAS*GLAPCWTSI 15
PG RAT GD + VSV T+R PTS+ W ++ N G P +I
Sbjct: 93 PGPLIRATVGDEIVVSV-TNRLGDPTSVHWHGIALRNDMDGTEPATANI 140
>UniRef50_Q2VZ09 Cluster: Predicted SAM-dependent methyltransferase;
n=4; Rhodospirillaceae|Rep: Predicted SAM-dependent
methyltransferase - Magnetospirillum magneticum (strain
AMB-1 / ATCC 700264)
Length = 820
Score = 35.1 bits (77), Expect = 2.0
Identities = 19/40 (47%), Positives = 22/40 (55%)
Frame = +1
Query: 655 HQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHR 774
H+G TH R + RQGH+ V AA R GHP HHR
Sbjct: 24 HRGDQETHDRIGPQLVPGTRQGHQAVDHAAPR-GHPQHHR 62
>UniRef50_A0YER0 Cluster: Putative uncharacterized protein; n=1;
marine gamma proteobacterium HTCC2143|Rep: Putative
uncharacterized protein - marine gamma proteobacterium
HTCC2143
Length = 110
Score = 35.1 bits (77), Expect = 2.0
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Frame = +1
Query: 487 YQSQRFHPVRHCNYEDYGLHQV*VGELVY--DHGRP*LGACGHHRVPRETSRLLRHCAHQ 660
+ + + HP+R Y G+ V +LV DH R A HR R RL + H+
Sbjct: 31 FHAFKIHPLRIA-YRT-GIDVTLVQQLVSGEDHQRLFKAALARHRKSRRDQRLHKSLRHK 88
Query: 661 GLHGTHLRHEVEQRVHNRQGHE 726
G+ L+H++EQ +G +
Sbjct: 89 GIAQAELQHKIEQDYQETKGQK 110
>UniRef50_A5BNN8 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 906
Score = 35.1 bits (77), Expect = 2.0
Identities = 32/103 (31%), Positives = 44/103 (42%)
Frame = -1
Query: 588 RPPVIIHKFPDSNLMKSIIFVVAMSNWMESLTLISGSG*RMVRPSCVTKYGTFLGPVATR 409
RPP H SN + S + A S +S+TLI +R T TF+ VA
Sbjct: 298 RPPRTAHIAQSSNPLLSRLDSTASST-SQSITLIGSDYDAYLRYQAATS--TFVASVAQT 354
Query: 408 LTLQNLYLASSGVIRWIVNLPLTS*IRRNSSLVFSIETTSINP 280
+ + SS + WI++ + I N L SI TTS P
Sbjct: 355 DNVSVCFTQSSSLGPWILDSGASDHISGNKHLFSSITTTSALP 397
>UniRef50_A7CME0 Cluster: Putative uncharacterized protein
precursor; n=1; Ralstonia pickettii 12D|Rep: Putative
uncharacterized protein precursor - Ralstonia pickettii
12D
Length = 533
Score = 34.7 bits (76), Expect = 2.6
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Frame = +1
Query: 580 GRP*LGACGHHRVPRETSRLLRHCAHQGLHGTHLRHEVEQ-RVHNRQGHEG-VHLAAARQ 753
G+P + A HRV +E + R H+ + H+ EQ RVH R G EG + A Q
Sbjct: 317 GKPAVQALEAHRVDQERADRRRDAPHRNVQRFHVDARAEQERVHQRDGAEGHEDVFAEEQ 376
Query: 754 GH 759
H
Sbjct: 377 AH 378
>UniRef50_Q9KI91 Cluster: VrrB; n=17; Bacteria|Rep: VrrB - Bacillus
anthracis
Length = 265
Score = 34.3 bits (75), Expect = 3.4
Identities = 24/89 (26%), Positives = 29/89 (32%)
Frame = +1
Query: 505 HPVRHCNYEDYGLHQV*VGELVYDHGRP*LGACGHHRVPRETSRLLRHCAHQGLHGTHLR 684
H H + + HQ G + H + G GHH H HG H
Sbjct: 118 HHQGHHGHHGHHHHQGHHGHHGHHHHQGHHGHQGHHHHQGHHGHHGHHQQQVHHHGHHHI 177
Query: 685 HEVEQRVHNRQGHEGVHLAAARQGHPPHH 771
H QGH+G H GH HH
Sbjct: 178 HPQAILYQTHQGHQGHHDHHGHHGHQGHH 206
Score = 33.5 bits (73), Expect = 6.0
Identities = 16/43 (37%), Positives = 19/43 (44%)
Frame = +1
Query: 646 HCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHR 774
H HQG HG H H + GH+G H GH HH+
Sbjct: 128 HHHHQGHHGHHGHHHHQ----GHHGHQGHHHHQGHHGHHGHHQ 166
>UniRef50_A7ATI1 Cluster: Putative uncharacterized protein; n=1;
Babesia bovis|Rep: Putative uncharacterized protein -
Babesia bovis
Length = 546
Score = 34.3 bits (75), Expect = 3.4
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Frame = +1
Query: 688 EVEQRVHNRQ---GHEGVHLAAARQGHPPHHR 774
E Q+VH R+ G E +HL + HPPHHR
Sbjct: 441 EYVQKVHEREMKSGEEAIHLPNSGTHHPPHHR 472
>UniRef50_A6GEF6 Cluster: Hydrolase, alpha/beta fold family protein;
n=1; Plesiocystis pacifica SIR-1|Rep: Hydrolase,
alpha/beta fold family protein - Plesiocystis pacifica
SIR-1
Length = 310
Score = 33.9 bits (74), Expect = 4.5
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Frame = +2
Query: 80 WMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVR 259
W +D LGG+ K+R LP+ +F ++ G V +V + ++ G R
Sbjct: 216 WWVDFLGGLIELGDDAKLRKIRADLPIYVFAGDQDPVGAQGKNVRALVDR--LRATGHAR 273
Query: 260 TDPT-YPAGFMDVVSIEKTNELFRLIYDVKG 349
T YP G ++++ + +++ R + D G
Sbjct: 274 VKQTLYPGGRHEMINERERDQVTRELIDWLG 304
>UniRef50_A0CVD9 Cluster: Chromosome undetermined scaffold_29, whole
genome shotgun sequence; n=4; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_29,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 731
Score = 33.9 bits (74), Expect = 4.5
Identities = 24/96 (25%), Positives = 39/96 (40%)
Frame = +2
Query: 269 TYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKFCKVKRVATGPKNVPYLV 448
TY ++ + + N L+ + G +T R EAK F +K ++ G L
Sbjct: 511 TYKKRLLNFATYQANNPS-SLLNKIYGMYTFERSENAEAKVHFLIMKNLSLGIPRNQILR 569
Query: 449 THDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFE 556
T+D + Y ++ L T K +DF K E
Sbjct: 570 TYDLKGSEYDREVLAKKPESDLSKLTLKDLDFFKIE 605
>UniRef50_A6E8K7 Cluster: Putative uncharacterized protein; n=1;
Pedobacter sp. BAL39|Rep: Putative uncharacterized
protein - Pedobacter sp. BAL39
Length = 195
Score = 33.5 bits (73), Expect = 6.0
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Frame = -1
Query: 216 FRTSFPVKAYFRRFLRKITRGKHSRNLWGPVDGLGAYTPPSLSNIHALGAFKRFK---CF 46
F F KA FR+ +RK+ G+H+ +D A+T PSL H KR++ F
Sbjct: 11 FLGRFFFKARFRKLIRKL--GRHTEVYLVDIDNTLAHTWPSLQQRHYSAENKRYRSLPIF 68
Query: 45 LGPRAML 25
+G R+ L
Sbjct: 69 IGMRSYL 75
>UniRef50_Q5QMN1 Cluster: Putative uncharacterized protein
P0419B01.9; n=1; Oryza sativa (japonica
cultivar-group)|Rep: Putative uncharacterized protein
P0419B01.9 - Oryza sativa subsp. japonica (Rice)
Length = 123
Score = 33.5 bits (73), Expect = 6.0
Identities = 29/67 (43%), Positives = 30/67 (44%), Gaps = 14/67 (20%)
Frame = -2
Query: 755 PC-RAAARCTPSC---PCRL*TR-------CSTSWRRCV-PWSP*CAQ--CRRSRDVSRG 618
PC RAAA C P C PCR R C + CV P SP CA CRR R R
Sbjct: 41 PCVRAAAPCVPPCTSRPCRRPRRHLRPPSACVRAAALCVPPSSPPCASRPCRRPRHRLRP 100
Query: 617 TRWCPHA 597
C HA
Sbjct: 101 PAACVHA 107
>UniRef50_Q59046 Cluster: DNA topoisomerase 1; n=6;
Methanococcales|Rep: DNA topoisomerase 1 - Methanococcus
jannaschii
Length = 761
Score = 33.5 bits (73), Expect = 6.0
Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 1/105 (0%)
Frame = +2
Query: 119 PSTGPHKLRECLPLVIFLRNRLK-YALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDV 295
P T KL + + + N +K + + G +I+K+ L V+GK + DP +PA +
Sbjct: 316 PRTSSQKLPKDRKYLEDILNIIKNHPVYGKWAERILKENLKPVEGK-KEDPAHPAIHIVD 374
Query: 296 VSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKFCKVKRVATGPK 430
+ E+ +E + IYD+ R T+ + A+ ++ VK G K
Sbjct: 375 IPKEELSEKEKEIYDLIARRTLAAFW-DNAEREYLNVKIDIKGEK 418
>UniRef50_UPI0000D5573E Cluster: PREDICTED: similar to
Tyrosine-protein phosphatase non-receptor type 13
(Protein-tyrosine phosphatase 1E) (PTP-E1) (hPTPE1)
(PTP-BAS) (Protein-tyrosine phosphatase PTPL1)
(Fas-associated protein-tyrosine phosphatase 1) (FAP-1);
n=1; Tribolium castaneum|Rep: PREDICTED: similar to
Tyrosine-protein phosphatase non-receptor type 13
(Protein-tyrosine phosphatase 1E) (PTP-E1) (hPTPE1)
(PTP-BAS) (Protein-tyrosine phosphatase PTPL1)
(Fas-associated protein-tyrosine phosphatase 1) (FAP-1)
- Tribolium castaneum
Length = 768
Score = 33.1 bits (72), Expect = 7.9
Identities = 15/45 (33%), Positives = 28/45 (62%)
Frame = +2
Query: 443 LVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMI 577
+ DGR ++ D +IKVND ++TT+I+D ++ G +C++
Sbjct: 708 VAARDGR-LKPGDRVIKVNDESVEHLSTTEIIDLLRIVRGPVCIV 751
>UniRef50_A5WHY9 Cluster: TonB-dependent receptor; n=1;
Psychrobacter sp. PRwf-1|Rep: TonB-dependent receptor -
Psychrobacter sp. PRwf-1
Length = 836
Score = 33.1 bits (72), Expect = 7.9
Identities = 17/53 (32%), Positives = 20/53 (37%)
Frame = +1
Query: 610 HRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPH 768
HR+ R T L H H H H+ E+ H GHE GH H
Sbjct: 314 HRINRLTCGLDEHEHGAHEHHDHEEHDHEEHEHEEHGHEAHEHGHEEHGHQEH 366
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 854,414,419
Number of Sequences: 1657284
Number of extensions: 19175277
Number of successful extensions: 63223
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 59210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63037
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 65027411410
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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