Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9d13
         (446 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa...    27   1.3  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    27   1.7  
SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces...    26   3.0  
SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces p...    26   3.0  
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    25   5.3  
SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual    24   9.3  

>SPCC550.03c |||RNA helicase involved in mRNA
           catabolism|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1213

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +2

Query: 281 KDKFIINKLTNADALQHLKFLKVNYNKVVDEH 376
           K+ ++I+ L     L+H  ++K N  K+VD+H
Sbjct: 443 KNIYVISTLKRPVPLEHYLWVKQNMFKIVDQH 474


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 12/89 (13%)
 Frame = +2

Query: 128 DARVIFGTIIA--LPEITH---TITHVTERDRSARVYKN-------MSVLDAVEWIANRA 271
           D R +F  + +  LP + H   T+T+V  RD S  +Y++       + +  +   +    
Sbjct: 355 DRRPLFTIVESQILPCVLHSYETLTNVFHRDDSKHLYESAVDHGRRLIMKFSDSELHTFL 414

Query: 272 FECKDKFIINKLTNADALQHLKFLKVNYN 358
           F C +K + N   N+D+ + +KF+  + N
Sbjct: 415 FHCVNKIVANTTENSDSAEAVKFILDSQN 443


>SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 735

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +3

Query: 219 YIKICPFWTLWSGLQTERLNAK 284
           Y     FW LW+G+ T R  AK
Sbjct: 546 YESATAFWALWAGVATPRQAAK 567


>SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 832

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 329 HLKFLKVNYNKVVDEHVSTSQYL 397
           + K L  +YNKV  EHVS S+ L
Sbjct: 185 NFKSLMTSYNKVNGEHVSQSRIL 207


>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 25.0 bits (52), Expect = 5.3
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 239 LDAVEWIANRAFECKDKFIINKLTNADAL 325
           L ++ W+ NR F+ ++K    K  N+D L
Sbjct: 569 LASLGWVENRIFQMEEKLDTIKKKNSDVL 597


>SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 272 FECKDKFIINKLTNADA 322
           F+C+DKF+I  +   DA
Sbjct: 77  FKCRDKFLIQSMAIGDA 93


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,624,442
Number of Sequences: 5004
Number of extensions: 30672
Number of successful extensions: 70
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)