Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9d13
         (446 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0864 + 21994286-21994989,21996257-21996958,21997221-219973...    28   3.9  
04_04_0051 - 22371490-22371658,22372333-22372778,22373880-223740...    28   3.9  
04_04_1374 - 33028790-33028951,33029033-33029087,33029402-330294...    27   6.9  
04_03_0505 + 16628145-16628217,16628612-16628767,16628964-166291...    27   6.9  
10_08_0083 - 14715517-14715595,14716022-14716150,14716280-147164...    27   9.1  
03_01_0218 - 1717246-1717892,1717995-1718163,1718262-1720022,172...    27   9.1  

>08_02_0864 + 21994286-21994989,21996257-21996958,21997221-21997374,
            21997494-21997838,21998323-21999240,21999312-21999640,
            21999709-21999832,21999901-22000071,22000188-22001648,
            22002647-22002910,22003866-22004189
          Length = 1831

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +2

Query: 284  DKFIINKLTNADALQHLKFLKVNYNKVVDEHVSTSQYLS*IKLM 415
            D+FII ++T  +    LKF  ++Y K + E +ST    S  K++
Sbjct: 1590 DRFIIKQVTKTELESFLKF-GLDYFKYLSESISTGSPTSLAKIL 1632


>04_04_0051 -
           22371490-22371658,22372333-22372778,22373880-22374054,
           22374134-22374240,22374358-22374646,22374942-22375075,
           22375228-22375423,22375611-22375719,22375839-22375965
          Length = 583

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +3

Query: 186 LMLQNVTAPLVYIKICPFWTLWSGLQTERLNAKTNL 293
           ++L NV   L+      +WT++S ++TER+NA   L
Sbjct: 54  MVLGNVGVILLLFPAHVWWTIYSLIKTERINAGLKL 89


>04_04_1374 -
           33028790-33028951,33029033-33029087,33029402-33029466,
           33029558-33029701,33029825-33029878,33029971-33030220,
           33030340-33030446,33031206-33031216,33032682-33032796,
           33032897-33033005,33033088-33033203,33033288-33033647
          Length = 515

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = +2

Query: 179 TITHVTERDRSARVYKNMSVLDAVEWIANRAFECKDKFIINKLTNADALQ 328
           T+  + ER+R+    K+ ++ D  E I +  F  K +  I K  NAD L+
Sbjct: 437 TLKEIEERERAQLKLKDDTIRDLEEQIKDFKFSIKLQKSIEKNKNADDLK 486


>04_03_0505 +
           16628145-16628217,16628612-16628767,16628964-16629125,
           16629699-16629842,16629952-16630028,16630710-16630874,
           16630988-16631341
          Length = 376

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +2

Query: 293 IINKLTNADALQHLKFLKVNYNKVVDEHVSTS 388
           IINK+TN+D +Q  K  K    ++VD   S S
Sbjct: 344 IINKMTNSDGMQATKGSKAAVFRLVDYSESDS 375


>10_08_0083 -
           14715517-14715595,14716022-14716150,14716280-14716487,
           14716789-14716852,14717727-14717768,14718175-14718279,
           14718601-14718695,14718789-14718882
          Length = 271

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = +1

Query: 133 ACNFRDHYRAARDNTH--NHSCYRT*PLRSCI 222
           AC F  HY++ + +T+  N  C +T P R+ I
Sbjct: 65  ACFFHSHYKSGQSSTYQKNGLCLKTFPNRAII 96


>03_01_0218 -
           1717246-1717892,1717995-1718163,1718262-1720022,
           1720531-1720610,1720854-1720981,1721004-1721012,
           1723701-1723742,1725891-1726002,1726358-1726514,
           1726678-1726762,1727628-1727713,1727998-1728042
          Length = 1106

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +3

Query: 33  IFII*PFGKAQMLT*YFFPATLNIYNINVHVTTRV 137
           +FII   GK ++ +  FFPA + +   N+ V   +
Sbjct: 79  LFIIDEVGKMELFSSAFFPAVMRVIESNIPVLATI 113


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,206,127
Number of Sequences: 37544
Number of extensions: 161681
Number of successful extensions: 425
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 425
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 859680288
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)