Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9d13
         (446 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57625| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.14 
SB_38188| Best HMM Match : rve (HMM E-Value=5.7e-31)                   31   0.57 
SB_5027| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   1.3  
SB_2062| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   5.3  
SB_34706| Best HMM Match : Ion_trans_2 (HMM E-Value=2.1e-16)           27   7.1  
SB_24494| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.3  

>SB_57625| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1751

 Score = 32.7 bits (71), Expect = 0.14
 Identities = 18/49 (36%), Positives = 27/49 (55%)
 Frame = +2

Query: 167  EITHTITHVTERDRSARVYKNMSVLDAVEWIANRAFECKDKFIINKLTN 313
            E+ H I H+   D+ A V  + SVLD V W+     +C DK I+ + +N
Sbjct: 1610 EVVH-IQHIEWPDKCAPV-NHQSVLDLVSWVQLSQQQCGDKAIVVQCSN 1656


>SB_38188| Best HMM Match : rve (HMM E-Value=5.7e-31)
          Length = 836

 Score = 30.7 bits (66), Expect = 0.57
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
 Frame = +2

Query: 188 HVTERDRSARVYKNMS----VLDAVEWIANRAFECKDKFIINK 304
           H T  D   RVYKN      V +  EW+A    EC D ++ N+
Sbjct: 322 HSTINDTPFRVYKNREPSHLVPEDSEWLAGADEECSDDYVFNE 364


>SB_5027| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 118

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 17/43 (39%), Positives = 25/43 (58%)
 Frame = +2

Query: 113 KRSRYDARVIFGTIIALPEITHTITHVTERDRSARVYKNMSVL 241
           KR+ Y  RVI   ++ L +   TI+HVT+ + S R Y  M V+
Sbjct: 25  KRTYYPMRVI---LLGLHDERDTISHVTKNNPSKRTYYPMRVI 64



 Score = 29.1 bits (62), Expect = 1.8
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = +2

Query: 113 KRSRYDARVIFGTIIALPEITHTITHVTERDRSARVYKNMSVL 241
           KR+ Y  RVI   ++ L +   TI+HVT+   S R Y  M V+
Sbjct: 55  KRTYYPMRVI---LLGLHDERDTISHVTKNSPSKRTYYPMRVI 94


>SB_2062| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1136

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -1

Query: 122 VNVYIINIQRCGKKILSEHLSFTERLYYKYSTLLVLS 12
           ++++ I++ RC +  LSEH  F E    ++ T  + S
Sbjct: 69  LSIFDIDVVRCSELSLSEHEDFEEEFILRWGTHYIKS 105


>SB_34706| Best HMM Match : Ion_trans_2 (HMM E-Value=2.1e-16)
          Length = 514

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = -2

Query: 370 VNNFVIIYFQKFQMLQSVRVGQFVDNKFVF 281
           V+N+VI YF K    + +RV +++D+   +
Sbjct: 320 VDNYVITYFLKLIRDEPIRVEKYIDHSITY 349


>SB_24494| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 518

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 12/58 (20%), Positives = 26/58 (44%)
 Frame = -2

Query: 355 IIYFQKFQMLQSVRVGQFVDNKFVFAFKRSVCNPLHSVQNGHIFIYTSGAVTFCNMSD 182
           I+Y++  +   ++ +   +++        +V +PLH +  GH F+       FC   D
Sbjct: 2   IVYYELQETTANILLSVKINSTIAKEVFDAVSDPLHEIFKGHSFLLFGILDEFCGKRD 59


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,641,426
Number of Sequences: 59808
Number of extensions: 221515
Number of successful extensions: 441
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 441
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 883875528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)