Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc9d13
(446 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC150249-1|AAI50250.1| 1589|Homo sapiens sterile alpha motif dom... 32 1.0
BC132775-1|AAI32776.1| 1589|Homo sapiens sterile alpha motif dom... 32 1.0
BC132773-1|AAI32774.1| 1589|Homo sapiens sterile alpha motif dom... 32 1.0
AF445355-1|AAQ04637.1| 1589|Homo sapiens OEF1 protein. 32 1.0
AB095925-1|BAC23101.1| 1595|Homo sapiens KIAA2004 protein protein. 32 1.0
X76061-1|CAA53661.1| 1139|Homo sapiens 130K protein protein. 30 4.1
X74594-1|CAA52671.1| 1082|Homo sapiens Rb2/p130 protein protein. 30 4.1
S67171-1|AAB29227.1| 1139|Homo sapiens p130 protein. 30 4.1
BX537767-1|CAD97830.1| 849|Homo sapiens hypothetical protein pr... 30 4.1
BC034490-1|AAH34490.1| 1139|Homo sapiens retinoblastoma-like 2 (... 30 4.1
L00352-1|AAA56833.1| 860|Homo sapiens low density lipoprotein r... 29 5.5
BT007361-1|AAP36025.1| 860|Homo sapiens low density lipoprotein... 29 5.5
BC014514-1|AAH14514.1| 860|Homo sapiens low density lipoprotein... 29 5.5
AY324609-1|AAP72971.1| 860|Homo sapiens low density lipoprotein... 29 5.5
AY114155-1|AAM56036.1| 860|Homo sapiens low density lipoprotein... 29 5.5
AF217403-1|AAF24515.1| 837|Homo sapiens low density lipoprotein... 29 5.5
AB209409-1|BAD92646.1| 870|Homo sapiens low density lipoprotein... 29 5.5
L76517-1|AAB46370.1| 463|Homo sapiens presenilin 1 protein. 29 9.5
>BC150249-1|AAI50250.1| 1589|Homo sapiens sterile alpha motif domain
containing 9 protein.
Length = 1589
Score = 31.9 bits (69), Expect = 1.0
Identities = 18/59 (30%), Positives = 31/59 (52%)
Frame = +2
Query: 203 DRSARVYKNMSVLDAVEWIANRAFECKDKFIINKLTNADALQHLKFLKVNYNKVVDEHV 379
++SAR+ +++V+ + RAFE K K I + N + +K N+NK E+V
Sbjct: 842 EKSARIPDSIAVIQQLSPKEQRAFELKLKEIKEQHKNFEDFYSFMIMKTNFNKEYIENV 900
>BC132775-1|AAI32776.1| 1589|Homo sapiens sterile alpha motif domain
containing 9 protein.
Length = 1589
Score = 31.9 bits (69), Expect = 1.0
Identities = 18/59 (30%), Positives = 31/59 (52%)
Frame = +2
Query: 203 DRSARVYKNMSVLDAVEWIANRAFECKDKFIINKLTNADALQHLKFLKVNYNKVVDEHV 379
++SAR+ +++V+ + RAFE K K I + N + +K N+NK E+V
Sbjct: 842 EKSARIPDSIAVIQQLSPKEQRAFELKLKEIKEQHKNFEDFYSFMIMKTNFNKEYIENV 900
>BC132773-1|AAI32774.1| 1589|Homo sapiens sterile alpha motif domain
containing 9 protein.
Length = 1589
Score = 31.9 bits (69), Expect = 1.0
Identities = 18/59 (30%), Positives = 31/59 (52%)
Frame = +2
Query: 203 DRSARVYKNMSVLDAVEWIANRAFECKDKFIINKLTNADALQHLKFLKVNYNKVVDEHV 379
++SAR+ +++V+ + RAFE K K I + N + +K N+NK E+V
Sbjct: 842 EKSARIPDSIAVIQQLSPKEQRAFELKLKEIKEQHKNFEDFYSFMIMKTNFNKEYIENV 900
>AF445355-1|AAQ04637.1| 1589|Homo sapiens OEF1 protein.
Length = 1589
Score = 31.9 bits (69), Expect = 1.0
Identities = 18/59 (30%), Positives = 31/59 (52%)
Frame = +2
Query: 203 DRSARVYKNMSVLDAVEWIANRAFECKDKFIINKLTNADALQHLKFLKVNYNKVVDEHV 379
++SAR+ +++V+ + RAFE K K I + N + +K N+NK E+V
Sbjct: 842 EKSARIPDSIAVIQQLSPKEQRAFELKLKEIKEQHKNFEDFYSFMIMKTNFNKEYIENV 900
>AB095925-1|BAC23101.1| 1595|Homo sapiens KIAA2004 protein protein.
Length = 1595
Score = 31.9 bits (69), Expect = 1.0
Identities = 18/59 (30%), Positives = 31/59 (52%)
Frame = +2
Query: 203 DRSARVYKNMSVLDAVEWIANRAFECKDKFIINKLTNADALQHLKFLKVNYNKVVDEHV 379
++SAR+ +++V+ + RAFE K K I + N + +K N+NK E+V
Sbjct: 848 EKSARIPDSIAVIQQLSPKEQRAFELKLKEIKEQHKNFEDFYSFMIMKTNFNKEYIENV 906
>X76061-1|CAA53661.1| 1139|Homo sapiens 130K protein protein.
Length = 1139
Score = 29.9 bits (64), Expect = 4.1
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -1
Query: 104 NIQRCGKKILSEHLSFTERLYYK 36
+ C K+I S+H F E LYYK
Sbjct: 479 DFSNCAKEIASKHFRFAEMLYYK 501
>X74594-1|CAA52671.1| 1082|Homo sapiens Rb2/p130 protein protein.
Length = 1082
Score = 29.9 bits (64), Expect = 4.1
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -1
Query: 104 NIQRCGKKILSEHLSFTERLYYK 36
+ C K+I S+H F E LYYK
Sbjct: 422 DFSNCAKEIASKHFRFAEMLYYK 444
>S67171-1|AAB29227.1| 1139|Homo sapiens p130 protein.
Length = 1139
Score = 29.9 bits (64), Expect = 4.1
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -1
Query: 104 NIQRCGKKILSEHLSFTERLYYK 36
+ C K+I S+H F E LYYK
Sbjct: 479 DFSNCAKEIASKHFRFAEMLYYK 501
>BX537767-1|CAD97830.1| 849|Homo sapiens hypothetical protein
protein.
Length = 849
Score = 29.9 bits (64), Expect = 4.1
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -1
Query: 104 NIQRCGKKILSEHLSFTERLYYK 36
+ C K+I S+H F E LYYK
Sbjct: 189 DFSNCAKEIASKHFRFAEMLYYK 211
>BC034490-1|AAH34490.1| 1139|Homo sapiens retinoblastoma-like 2
(p130) protein.
Length = 1139
Score = 29.9 bits (64), Expect = 4.1
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -1
Query: 104 NIQRCGKKILSEHLSFTERLYYK 36
+ C K+I S+H F E LYYK
Sbjct: 479 DFSNCAKEIASKHFRFAEMLYYK 501
>L00352-1|AAA56833.1| 860|Homo sapiens low density lipoprotein
receptor protein.
Length = 860
Score = 29.5 bits (63), Expect = 5.5
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = -2
Query: 223 IYTSGAVTF-CNMSDCVCYLWQRDNGPE 143
+ T G +F CN S C+ LW DN P+
Sbjct: 145 VLTCGPASFQCNSSTCIPQLWACDNDPD 172
>BT007361-1|AAP36025.1| 860|Homo sapiens low density lipoprotein
receptor (familial hypercholesterolemia) protein.
Length = 860
Score = 29.5 bits (63), Expect = 5.5
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = -2
Query: 223 IYTSGAVTF-CNMSDCVCYLWQRDNGPE 143
+ T G +F CN S C+ LW DN P+
Sbjct: 145 VLTCGPASFQCNSSTCIPQLWACDNDPD 172
>BC014514-1|AAH14514.1| 860|Homo sapiens low density lipoprotein
receptor (familial hypercholesterolemia) protein.
Length = 860
Score = 29.5 bits (63), Expect = 5.5
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = -2
Query: 223 IYTSGAVTF-CNMSDCVCYLWQRDNGPE 143
+ T G +F CN S C+ LW DN P+
Sbjct: 145 VLTCGPASFQCNSSTCIPQLWACDNDPD 172
>AY324609-1|AAP72971.1| 860|Homo sapiens low density lipoprotein
receptor protein.
Length = 860
Score = 29.5 bits (63), Expect = 5.5
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = -2
Query: 223 IYTSGAVTF-CNMSDCVCYLWQRDNGPE 143
+ T G +F CN S C+ LW DN P+
Sbjct: 145 VLTCGPASFQCNSSTCIPQLWACDNDPD 172
>AY114155-1|AAM56036.1| 860|Homo sapiens low density lipoprotein
receptor protein.
Length = 860
Score = 29.5 bits (63), Expect = 5.5
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = -2
Query: 223 IYTSGAVTF-CNMSDCVCYLWQRDNGPE 143
+ T G +F CN S C+ LW DN P+
Sbjct: 145 VLTCGPASFQCNSSTCIPQLWACDNDPD 172
>AF217403-1|AAF24515.1| 837|Homo sapiens low density lipoprotein
receptor protein.
Length = 837
Score = 29.5 bits (63), Expect = 5.5
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = -2
Query: 223 IYTSGAVTF-CNMSDCVCYLWQRDNGPE 143
+ T G +F CN S C+ LW DN P+
Sbjct: 122 VLTCGPASFQCNSSTCIPQLWACDNDPD 149
>AB209409-1|BAD92646.1| 870|Homo sapiens low density lipoprotein
receptor precursor variant protein.
Length = 870
Score = 29.5 bits (63), Expect = 5.5
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = -2
Query: 223 IYTSGAVTF-CNMSDCVCYLWQRDNGPE 143
+ T G +F CN S C+ LW DN P+
Sbjct: 157 VLTCGPASFQCNSSTCIPQLWACDNDPD 184
>L76517-1|AAB46370.1| 463|Homo sapiens presenilin 1 protein.
Length = 463
Score = 28.7 bits (61), Expect = 9.5
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +3
Query: 81 FFPATLNIYNINVHVTTRV*FSGPLSRCQR*HTQSLMLQNVTAPLVYIKICPFWTLW 251
+ L I+N+ V + + GPL R Q+ + L++ + LV+IK P WT W
Sbjct: 191 YITVALLIWNLGVVGMISIHWKGPL-RLQQAY---LIMISALMALVFIKYLPEWTAW 243
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,285,381
Number of Sequences: 237096
Number of extensions: 947952
Number of successful extensions: 1693
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1693
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3644351872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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