Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc9d13
(446 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY118698-1|AAM50558.1| 570|Drosophila melanogaster AT19257p pro... 29 3.8
AE014296-2960|AAN11700.1| 573|Drosophila melanogaster CG32181-P... 29 3.8
AF517634-1|AAM77747.1| 4876|Drosophila melanogaster BIR-containi... 28 5.0
AE014297-1135|AAF54520.3| 4876|Drosophila melanogaster CG6303-PA... 28 5.0
U78084-1|AAB53369.1| 527|Drosophila melanogaster presenilin pro... 28 6.6
U77934-1|AAB61139.1| 541|Drosophila melanogaster presenilin hom... 28 6.6
AY061316-1|AAL28864.1| 541|Drosophila melanogaster LD23505p pro... 28 6.6
AF093402-2|AAD52708.1| 527|Drosophila melanogaster presenilin a... 28 6.6
AF093402-1|AAD52707.1| 541|Drosophila melanogaster presenilin a... 28 6.6
AF084184-2|AAC33128.1| 527|Drosophila melanogaster presenilin s... 28 6.6
AF084184-1|AAC33129.1| 541|Drosophila melanogaster presenilin l... 28 6.6
AF017024-1|AAD01610.1| 541|Drosophila melanogaster presenilin p... 28 6.6
AE014296-3364|AAN12132.1| 527|Drosophila melanogaster CG18803-P... 28 6.6
AE014296-3363|AAF51598.1| 541|Drosophila melanogaster CG18803-P... 28 6.6
>AY118698-1|AAM50558.1| 570|Drosophila melanogaster AT19257p
protein.
Length = 570
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +1
Query: 139 NFRDHYRAARDNTHNHSCYRT*PLRSCI*KYVRFGRCGVD 258
N+R++ + ++THNHS R P C K RC D
Sbjct: 87 NYRNNKTSHHNSTHNHSDKRIKPQTPCELKVPSGNRCPTD 126
>AE014296-2960|AAN11700.1| 573|Drosophila melanogaster CG32181-PA
protein.
Length = 573
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +1
Query: 139 NFRDHYRAARDNTHNHSCYRT*PLRSCI*KYVRFGRCGVD 258
N+R++ + ++THNHS R P C K RC D
Sbjct: 87 NYRNNKTSHHNSTHNHSDKRIKPQTPCELKVPSGNRCPTD 126
>AF517634-1|AAM77747.1| 4876|Drosophila melanogaster BIR-containing
ubiquitin-conjugatingenzyme protein.
Length = 4876
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/57 (28%), Positives = 29/57 (50%)
Frame = +2
Query: 224 KNMSVLDAVEWIANRAFECKDKFIINKLTNADALQHLKFLKVNYNKVVDEHVSTSQY 394
K +S L++V+ + + I++KLT A L L L+ K ++EH+S +
Sbjct: 1604 KTLSSLNSVKQTLKEEVKKEKADIMDKLTIAKFLPKLSLLESYMQKKINEHISFDDF 1660
>AE014297-1135|AAF54520.3| 4876|Drosophila melanogaster CG6303-PA
protein.
Length = 4876
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/57 (28%), Positives = 29/57 (50%)
Frame = +2
Query: 224 KNMSVLDAVEWIANRAFECKDKFIINKLTNADALQHLKFLKVNYNKVVDEHVSTSQY 394
K +S L++V+ + + I++KLT A L L L+ K ++EH+S +
Sbjct: 1604 KTLSSLNSVKQTLKEEVKKEKADIMDKLTIAKFLPKLSLLESYMQKKINEHISFDDF 1660
>U78084-1|AAB53369.1| 527|Drosophila melanogaster presenilin
protein.
Length = 527
Score = 27.9 bits (59), Expect = 6.6
Identities = 24/78 (30%), Positives = 35/78 (44%)
Frame = +3
Query: 90 ATLNIYNINVHVTTRV*FSGPLSRCQR*HTQSLMLQNVTAPLVYIKICPFWTLWSGLQTE 269
A L ++N V + + GPL R Q+ + L+ LV+IK P WT W+ L
Sbjct: 220 ALLIMWNFGVVGMMSIHWQGPL-RLQQGY---LIFVAALMALVFIKYLPEWTAWAVLAAI 275
Query: 270 RLNAKTNLLSTN*PTRTL 323
+ +LS P R L
Sbjct: 276 SIWDLIAVLSPRGPLRIL 293
>U77934-1|AAB61139.1| 541|Drosophila melanogaster presenilin
homolog protein.
Length = 541
Score = 27.9 bits (59), Expect = 6.6
Identities = 24/78 (30%), Positives = 35/78 (44%)
Frame = +3
Query: 90 ATLNIYNINVHVTTRV*FSGPLSRCQR*HTQSLMLQNVTAPLVYIKICPFWTLWSGLQTE 269
A L ++N V + + GPL R Q+ + L+ LV+IK P WT W+ L
Sbjct: 220 ALLIMWNFGVVGMMSIHWQGPL-RLQQGY---LIFVAALMALVFIKYLPEWTAWAVLAAI 275
Query: 270 RLNAKTNLLSTN*PTRTL 323
+ +LS P R L
Sbjct: 276 SIWDLIAVLSPRGPLRIL 293
>AY061316-1|AAL28864.1| 541|Drosophila melanogaster LD23505p
protein.
Length = 541
Score = 27.9 bits (59), Expect = 6.6
Identities = 24/78 (30%), Positives = 35/78 (44%)
Frame = +3
Query: 90 ATLNIYNINVHVTTRV*FSGPLSRCQR*HTQSLMLQNVTAPLVYIKICPFWTLWSGLQTE 269
A L ++N V + + GPL R Q+ + L+ LV+IK P WT W+ L
Sbjct: 220 ALLIMWNFGVVGMMSIHWQGPL-RLQQGY---LIFVAALMALVFIKYLPEWTAWAVLAAI 275
Query: 270 RLNAKTNLLSTN*PTRTL 323
+ +LS P R L
Sbjct: 276 SIWDLIAVLSPRGPLRIL 293
>AF093402-2|AAD52708.1| 527|Drosophila melanogaster presenilin a1
protein.
Length = 527
Score = 27.9 bits (59), Expect = 6.6
Identities = 24/78 (30%), Positives = 35/78 (44%)
Frame = +3
Query: 90 ATLNIYNINVHVTTRV*FSGPLSRCQR*HTQSLMLQNVTAPLVYIKICPFWTLWSGLQTE 269
A L ++N V + + GPL R Q+ + L+ LV+IK P WT W+ L
Sbjct: 220 ALLIMWNFGVVGMMSIHWQGPL-RLQQGY---LIFVAALMALVFIKYLPEWTAWAVLAAI 275
Query: 270 RLNAKTNLLSTN*PTRTL 323
+ +LS P R L
Sbjct: 276 SIWDLIAVLSPRGPLRIL 293
>AF093402-1|AAD52707.1| 541|Drosophila melanogaster presenilin a2
protein.
Length = 541
Score = 27.9 bits (59), Expect = 6.6
Identities = 24/78 (30%), Positives = 35/78 (44%)
Frame = +3
Query: 90 ATLNIYNINVHVTTRV*FSGPLSRCQR*HTQSLMLQNVTAPLVYIKICPFWTLWSGLQTE 269
A L ++N V + + GPL R Q+ + L+ LV+IK P WT W+ L
Sbjct: 220 ALLIMWNFGVVGMMSIHWQGPL-RLQQGY---LIFVAALMALVFIKYLPEWTAWAVLAAI 275
Query: 270 RLNAKTNLLSTN*PTRTL 323
+ +LS P R L
Sbjct: 276 SIWDLIAVLSPRGPLRIL 293
>AF084184-2|AAC33128.1| 527|Drosophila melanogaster presenilin
short form protein.
Length = 527
Score = 27.9 bits (59), Expect = 6.6
Identities = 24/78 (30%), Positives = 35/78 (44%)
Frame = +3
Query: 90 ATLNIYNINVHVTTRV*FSGPLSRCQR*HTQSLMLQNVTAPLVYIKICPFWTLWSGLQTE 269
A L ++N V + + GPL R Q+ + L+ LV+IK P WT W+ L
Sbjct: 220 ALLIMWNFGVVGMMSIHWQGPL-RLQQGY---LIFVAALMALVFIKYLPEWTAWAVLAAI 275
Query: 270 RLNAKTNLLSTN*PTRTL 323
+ +LS P R L
Sbjct: 276 SIWDLIAVLSPRGPLRIL 293
>AF084184-1|AAC33129.1| 541|Drosophila melanogaster presenilin long
form protein.
Length = 541
Score = 27.9 bits (59), Expect = 6.6
Identities = 24/78 (30%), Positives = 35/78 (44%)
Frame = +3
Query: 90 ATLNIYNINVHVTTRV*FSGPLSRCQR*HTQSLMLQNVTAPLVYIKICPFWTLWSGLQTE 269
A L ++N V + + GPL R Q+ + L+ LV+IK P WT W+ L
Sbjct: 220 ALLIMWNFGVVGMMSIHWQGPL-RLQQGY---LIFVAALMALVFIKYLPEWTAWAVLAAI 275
Query: 270 RLNAKTNLLSTN*PTRTL 323
+ +LS P R L
Sbjct: 276 SIWDLIAVLSPRGPLRIL 293
>AF017024-1|AAD01610.1| 541|Drosophila melanogaster presenilin
protein.
Length = 541
Score = 27.9 bits (59), Expect = 6.6
Identities = 24/78 (30%), Positives = 35/78 (44%)
Frame = +3
Query: 90 ATLNIYNINVHVTTRV*FSGPLSRCQR*HTQSLMLQNVTAPLVYIKICPFWTLWSGLQTE 269
A L ++N V + + GPL R Q+ + L+ LV+IK P WT W+ L
Sbjct: 220 ALLIMWNFGVVGMMSIHWQGPL-RLQQGY---LIFVAALMALVFIKYLPEWTAWAVLAAI 275
Query: 270 RLNAKTNLLSTN*PTRTL 323
+ +LS P R L
Sbjct: 276 SIWDLIAVLSPRGPLRIL 293
>AE014296-3364|AAN12132.1| 527|Drosophila melanogaster CG18803-PB,
isoform B protein.
Length = 527
Score = 27.9 bits (59), Expect = 6.6
Identities = 24/78 (30%), Positives = 35/78 (44%)
Frame = +3
Query: 90 ATLNIYNINVHVTTRV*FSGPLSRCQR*HTQSLMLQNVTAPLVYIKICPFWTLWSGLQTE 269
A L ++N V + + GPL R Q+ + L+ LV+IK P WT W+ L
Sbjct: 220 ALLIMWNFGVVGMMSIHWQGPL-RLQQGY---LIFVAALMALVFIKYLPEWTAWAVLAAI 275
Query: 270 RLNAKTNLLSTN*PTRTL 323
+ +LS P R L
Sbjct: 276 SIWDLIAVLSPRGPLRIL 293
>AE014296-3363|AAF51598.1| 541|Drosophila melanogaster CG18803-PA,
isoform A protein.
Length = 541
Score = 27.9 bits (59), Expect = 6.6
Identities = 24/78 (30%), Positives = 35/78 (44%)
Frame = +3
Query: 90 ATLNIYNINVHVTTRV*FSGPLSRCQR*HTQSLMLQNVTAPLVYIKICPFWTLWSGLQTE 269
A L ++N V + + GPL R Q+ + L+ LV+IK P WT W+ L
Sbjct: 220 ALLIMWNFGVVGMMSIHWQGPL-RLQQGY---LIFVAALMALVFIKYLPEWTAWAVLAAI 275
Query: 270 RLNAKTNLLSTN*PTRTL 323
+ +LS P R L
Sbjct: 276 SIWDLIAVLSPRGPLRIL 293
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,389,164
Number of Sequences: 53049
Number of extensions: 302133
Number of successful extensions: 674
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 674
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1435027293
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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