Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9d13
         (446 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032631-7|CAB63337.2|  855|Caenorhabditis elegans Hypothetical ...    29   1.5  
Z81484-7|CAE11296.1|  221|Caenorhabditis elegans Hypothetical pr...    27   6.2  
AF024501-6|AAN65317.1|  321|Caenorhabditis elegans Hypothetical ...    27   8.2  

>AL032631-7|CAB63337.2|  855|Caenorhabditis elegans Hypothetical
           protein Y106G6H.5 protein.
          Length = 855

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 33/142 (23%), Positives = 61/142 (42%), Gaps = 11/142 (7%)
 Frame = +2

Query: 2   SNAHLIQATLNIYNITVR*SSNAHLIFFSRNVEYL*YKRSRYDARVIFGTIIALPEITHT 181
           +N +LI  T  +  +T     ++H    +RN+          DA  +FG I+   E    
Sbjct: 412 NNQYLIGRTPEVAALTYSNLYHSHQCHTARNLRMAPIYHQLRDAGAVFGEIMGY-ERPLW 470

Query: 182 ITHVTERDRSARVYKNMSVLDAVEWIANRAFE---CKDK--------FIINKLTNADALQ 328
                + +R+A +    +++   EW    A E   C+++        F    +T  DA++
Sbjct: 471 FEKTPKTERNALMSGQDALIGKPEWFERVASEYEACRERVGLMDMSSFSKYDITGEDAVE 530

Query: 329 HLKFLKVNYNKVVDEHVSTSQY 394
           +L+FL    +  VDE + T+ Y
Sbjct: 531 YLQFL---CSANVDEPIGTTVY 549


>Z81484-7|CAE11296.1|  221|Caenorhabditis elegans Hypothetical
           protein C47A10.7 protein.
          Length = 221

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -1

Query: 425 FIYTLILFTTNIDSLKRVRQQLCYNLLSKISNVAKRPRWSI 303
           +IY+ +LF   + SL  V    CY +L K   V K  +WS+
Sbjct: 10  YIYSNVLFVIAVISLP-VHLFGCYCILFKTPEVMKSVKWSL 49


>AF024501-6|AAN65317.1|  321|Caenorhabditis elegans Hypothetical
           protein F39E9.11 protein.
          Length = 321

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 18/68 (26%), Positives = 30/68 (44%)
 Frame = +2

Query: 149 TIIALPEITHTITHVTERDRSARVYKNMSVLDAVEWIANRAFECKDKFIINKLTNADALQ 328
           T+++L E   T+T + E        + M V   V WI    F   + F+ +K  +A  + 
Sbjct: 110 TLVSLTEHCQTLTKLVEVPNQPGAVEVMYVYALVPWINPLQFSFDEMFLSSKKNDAVLVI 169

Query: 329 HLKFLKVN 352
             + L VN
Sbjct: 170 GERKLHVN 177


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,857,264
Number of Sequences: 27780
Number of extensions: 170899
Number of successful extensions: 452
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 452
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 777938954
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)