Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9d13
         (446 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   4.6  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   4.6  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   4.6  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   4.6  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     21   6.1  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   8.1  
AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.        21   8.1  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = +2

Query: 131 ARVIFGTIIALPEITHTITHVTERDRSARVYKNMS 235
           A+ I G   +LP + H+ +     +R  +VY+ ++
Sbjct: 475 AKCIIGKDYSLPMVNHSKSSRINIERMKQVYQQLN 509


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +3

Query: 51  FGKAQMLT*YFFPATLNIYNINV 119
           +     LT + FP+TLNI ++ +
Sbjct: 375 YSSQNYLTVHSFPSTLNIPSVKI 397


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -2

Query: 253 LHSVQNGHIFIYTSGAVTFCNMSDCVCYLW 164
           LH++     F   +  VTF  MS    YLW
Sbjct: 84  LHNIWRPDCFFKNAKKVTFHEMSIPNHYLW 113


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = +1

Query: 127 RRACNFRDHYRAARDNTHNHSC 192
           R+  ++ D+   + +NT N SC
Sbjct: 171 RKNSDYLDNQEVSMENTENKSC 192


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 11/44 (25%), Positives = 22/44 (50%)
 Frame = -1

Query: 152 WSRKLHARRNVNVYIINIQRCGKKILSEHLSFTERLYYKYSTLL 21
           W + L+ R +V  Y+I+++       +E +     +Y+ Y  LL
Sbjct: 94  WKKNLNLRDSVTKYLIHLKEIED---TEPILLIAYIYHLYMGLL 134


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +3

Query: 222 IKICPFWTLWSGL 260
           +KI P +T+W  L
Sbjct: 306 VKISPLFTIWGSL 318


>AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.
          Length = 76

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +3

Query: 222 IKICPFWTLWSGL 260
           +KI P +T+W  L
Sbjct: 56  VKISPLFTIWGSL 68


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,452
Number of Sequences: 438
Number of extensions: 2473
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11697255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)