Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9d09
         (442 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8649| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   1.7  
SB_46386| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_21285| Best HMM Match : EGF_CA (HMM E-Value=1.3e-37)                27   6.9  
SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)                27   9.1  
SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  
SB_39510| Best HMM Match : VWA (HMM E-Value=0)                         27   9.1  
SB_12737| Best HMM Match : C_tripleX (HMM E-Value=0.027)               27   9.1  
SB_59145| Best HMM Match : Keratin_B2 (HMM E-Value=0.0012)             27   9.1  
SB_1891| Best HMM Match : EGF (HMM E-Value=6.5e-15)                    27   9.1  

>SB_8649| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 82

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +1

Query: 145 FSKALVALQKPSWQVNSLAALEIT-QLSLHC*SVTHGNRFNEQSTPRLC*NVKFNGGA 315
           F+K    ++     +N L AL I    S    S   G R N QSTP++    K +GG+
Sbjct: 6   FTKPTTKVEPKHLYMNKLIALTIILSTSFFTFSQVLGGRENSQSTPKVAEATKLSGGS 63


>SB_46386| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 849

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = +2

Query: 107 VRDRILSSPEPVRLAKRWWRYKNHPGRSTRLQ--RWKSR 217
           +R R +  P+P    + WW   +   R  R +  RWKSR
Sbjct: 805 LRQRFVRLPDPGNPYRSWWTVASDDVRRQRRRKPRWKSR 843


>SB_21285| Best HMM Match : EGF_CA (HMM E-Value=1.3e-37)
          Length = 517

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 16/52 (30%), Positives = 20/52 (38%)
 Frame = -3

Query: 248 CVTDQQCRDNCVISSAASELTCQDGFCNATNALLNAQAPDLIECDPALGLLH 93
           CV   QC  N   ++   E TC    CN        +  D+ EC  AL   H
Sbjct: 303 CVEGNQCHSNATCNNTIGEYTCT---CNVGFTGDGYECNDVDECAHALHNCH 351


>SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
          Length = 3891

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = -3

Query: 272  DCSLNRLPCVTDQQCRDNCVISSAASELTCQDGF 171
            DC++N  PCV +  C   C +       +C  G+
Sbjct: 2122 DCTVN--PCVLNGGCTHTCTVLDGKPVCSCPQGY 2153


>SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5834

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
 Frame = -3

Query: 275 VDCSLNRLPCVTDQQCRDNCVISSAASELTCQDGFCNATNAL--LNAQAPDLIECDPALG 102
           ++  +  +PC     C +   +   A+ L     F N  +A+  +N+Q   L+E D   G
Sbjct: 733 LEVQVRLVPCFASSSCANAVAVKIGATVLNIHSRFANTEDAVVSVNSQEIALLEMDLGHG 792

Query: 101 LLH 93
             +
Sbjct: 793 FTY 795


>SB_39510| Best HMM Match : VWA (HMM E-Value=0)
          Length = 705

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -3

Query: 281 RGVDCSLNRLPCVTDQQCRD-NCVISSAASELTCQDGF 171
           +G DCSL+   C +    ++ NC+ S  +    C+DGF
Sbjct: 32  QGKDCSLDVDKCKSSPCNKNQNCINSFGSFTCVCKDGF 69


>SB_12737| Best HMM Match : C_tripleX (HMM E-Value=0.027)
          Length = 442

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 10/32 (31%), Positives = 13/32 (40%)
 Frame = -3

Query: 254 LPCVTDQQCRDNCVISSAASELTCQDGFCNAT 159
           L C   Q+C   C+     S + C    CN T
Sbjct: 74  LQCAVKQECNQTCIAGRCVSAV-CSSRMCNQT 104


>SB_59145| Best HMM Match : Keratin_B2 (HMM E-Value=0.0012)
          Length = 489

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 10/32 (31%), Positives = 13/32 (40%)
 Frame = -3

Query: 254 LPCVTDQQCRDNCVISSAASELTCQDGFCNAT 159
           L C   Q+C   C+     S + C    CN T
Sbjct: 74  LQCAVKQECNQTCIAGRCVSAV-CSSRMCNQT 104


>SB_1891| Best HMM Match : EGF (HMM E-Value=6.5e-15)
          Length = 106

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -3

Query: 281 RGVDCSLNRLPCVTDQQCRD-NCVISSAASELTCQDGF 171
           +G DCSL+   C +    ++ NC+ S  +    C+DGF
Sbjct: 61  QGKDCSLDVDECKSSPCNKNQNCINSFGSFTCVCKDGF 98


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,014,389
Number of Sequences: 59808
Number of extensions: 288431
Number of successful extensions: 720
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 859323430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)