Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc9d08
(354 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC121045-1|AAI21046.1| 739|Homo sapiens ADAM metallopeptidase d... 32 0.58
AY358321-1|AAQ88687.1| 715|Homo sapiens ADAM18 protein. 32 0.58
AJ133004-1|CAB40812.1| 739|Homo sapiens tMDC III protein protein. 32 0.58
U20362-1|AAA86720.1| 824|Homo sapiens Tg737 protein. 28 9.5
BC030776-1|AAH30776.2| 833|Homo sapiens intraflagellar transpor... 28 9.5
AL590096-4|CAM20430.1| 824|Homo sapiens intraflagellar transpor... 28 9.5
AL590096-3|CAI14390.2| 833|Homo sapiens intraflagellar transpor... 28 9.5
AL161772-3|CAM13405.1| 824|Homo sapiens intraflagellar transpor... 28 9.5
AL161772-2|CAH70874.2| 833|Homo sapiens intraflagellar transpor... 28 9.5
>BC121045-1|AAI21046.1| 739|Homo sapiens ADAM metallopeptidase
domain 18 protein.
Length = 739
Score = 31.9 bits (69), Expect = 0.58
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +3
Query: 114 NDVIC-LNSLYE*NSTCKTQSRDDVICFSKLNLGNDVICFSELNSLYE*NSTC 269
N +C L + Y N C+T F K G CF E+NSL+E + C
Sbjct: 479 NGRLCKLGTAYCYNGQCQTTDNQCAKIFGKGAQGAPFACFKEVNSLHERSENC 531
>AY358321-1|AAQ88687.1| 715|Homo sapiens ADAM18 protein.
Length = 715
Score = 31.9 bits (69), Expect = 0.58
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +3
Query: 114 NDVIC-LNSLYE*NSTCKTQSRDDVICFSKLNLGNDVICFSELNSLYE*NSTC 269
N +C L + Y N C+T F K G CF E+NSL+E + C
Sbjct: 455 NGRLCKLGTAYCYNGQCQTTDNQCAKIFGKGAQGAPFACFKEVNSLHERSENC 507
>AJ133004-1|CAB40812.1| 739|Homo sapiens tMDC III protein protein.
Length = 739
Score = 31.9 bits (69), Expect = 0.58
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +3
Query: 114 NDVIC-LNSLYE*NSTCKTQSRDDVICFSKLNLGNDVICFSELNSLYE*NSTC 269
N +C L + Y N C+T F K G CF E+NSL+E + C
Sbjct: 479 NGRLCKLGTAYCYNGQCQTTDNQCAKIFGKGAQGAPFACFKEVNSLHERSENC 531
>U20362-1|AAA86720.1| 824|Homo sapiens Tg737 protein.
Length = 824
Score = 27.9 bits (59), Expect = 9.5
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Frame = +3
Query: 93 FSKLNLRNDVICLNSLYE*NSTCKTQSR-DDVI-CFSKLN--LGNDVICFSELNSLYE 254
F K LRND C +LY T + +R D+ + CF KL+ L N ++ ++YE
Sbjct: 506 FYKEALRNDSSCTEALYNIGLTYEKLNRLDEALDCFLKLHAILRNSAEVLYQIANIYE 563
>BC030776-1|AAH30776.2| 833|Homo sapiens intraflagellar transport
88 homolog (Chlamydomonas) protein.
Length = 833
Score = 27.9 bits (59), Expect = 9.5
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Frame = +3
Query: 93 FSKLNLRNDVICLNSLYE*NSTCKTQSR-DDVI-CFSKLN--LGNDVICFSELNSLYE 254
F K LRND C +LY T + +R D+ + CF KL+ L N ++ ++YE
Sbjct: 515 FYKEALRNDSSCTEALYNIGLTYEKLNRLDEALDCFLKLHAILRNSAEVLYQIANIYE 572
>AL590096-4|CAM20430.1| 824|Homo sapiens intraflagellar transport
88 homolog (Chlamydomonas) protein.
Length = 824
Score = 27.9 bits (59), Expect = 9.5
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Frame = +3
Query: 93 FSKLNLRNDVICLNSLYE*NSTCKTQSR-DDVI-CFSKLN--LGNDVICFSELNSLYE 254
F K LRND C +LY T + +R D+ + CF KL+ L N ++ ++YE
Sbjct: 506 FYKEALRNDSSCTEALYNIGLTYEKLNRLDEALDCFLKLHAILRNSAEVLYQIANIYE 563
>AL590096-3|CAI14390.2| 833|Homo sapiens intraflagellar transport
88 homolog (Chlamydomonas) protein.
Length = 833
Score = 27.9 bits (59), Expect = 9.5
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Frame = +3
Query: 93 FSKLNLRNDVICLNSLYE*NSTCKTQSR-DDVI-CFSKLN--LGNDVICFSELNSLYE 254
F K LRND C +LY T + +R D+ + CF KL+ L N ++ ++YE
Sbjct: 515 FYKEALRNDSSCTEALYNIGLTYEKLNRLDEALDCFLKLHAILRNSAEVLYQIANIYE 572
>AL161772-3|CAM13405.1| 824|Homo sapiens intraflagellar transport
88 homolog (Chlamydomonas) protein.
Length = 824
Score = 27.9 bits (59), Expect = 9.5
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Frame = +3
Query: 93 FSKLNLRNDVICLNSLYE*NSTCKTQSR-DDVI-CFSKLN--LGNDVICFSELNSLYE 254
F K LRND C +LY T + +R D+ + CF KL+ L N ++ ++YE
Sbjct: 506 FYKEALRNDSSCTEALYNIGLTYEKLNRLDEALDCFLKLHAILRNSAEVLYQIANIYE 563
>AL161772-2|CAH70874.2| 833|Homo sapiens intraflagellar transport
88 homolog (Chlamydomonas) protein.
Length = 833
Score = 27.9 bits (59), Expect = 9.5
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Frame = +3
Query: 93 FSKLNLRNDVICLNSLYE*NSTCKTQSR-DDVI-CFSKLN--LGNDVICFSELNSLYE 254
F K LRND C +LY T + +R D+ + CF KL+ L N ++ ++YE
Sbjct: 515 FYKEALRNDSSCTEALYNIGLTYEKLNRLDEALDCFLKLHAILRNSAEVLYQIANIYE 572
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,831,533
Number of Sequences: 237096
Number of extensions: 483645
Number of successful extensions: 4884
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4884
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2075554296
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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