Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9d08
         (354 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00065-1|AAK68287.1|  400|Caenorhabditis elegans Hypothetical pr...    27   2.8  
Z78420-3|CAC42299.1|   85|Caenorhabditis elegans Hypothetical pr...    26   6.6  
AF067609-5|AAC17534.1|  644|Caenorhabditis elegans Hypothetical ...    26   6.6  

>U00065-1|AAK68287.1|  400|Caenorhabditis elegans Hypothetical
           protein D1044.7 protein.
          Length = 400

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
 Frame = +3

Query: 6   NDVICFSKLNSLYE*NSTCKTQSRDD-VICFSKLNLRNDVICLNSLYE*NSTCKTQSRDD 182
           N+ +C    N+    NS+ +  +    V CF+     +  IC N     N+   T S   
Sbjct: 64  NNYLCCHSQNTQCGTNSSPQVSASGQVVTCFTNSQCASGYICSNGACCPNTNSNTCSTTG 123

Query: 183 VICFS-KLNLGNDVICFSELN 242
             CF+ ++++G    CF+ +N
Sbjct: 124 TPCFTGQISVGGQ--CFNSVN 142


>Z78420-3|CAC42299.1|   85|Caenorhabditis elegans Hypothetical
           protein F45H11.5 protein.
          Length = 85

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +3

Query: 99  KLNLRNDVICLNSLYE*NSTCKTQSRDDVIC 191
           KL + N ++CL+   + NS C++ ++D   C
Sbjct: 30  KLEMLNYMVCLHEKKQQNSECRSTAKDYFEC 60


>AF067609-5|AAC17534.1|  644|Caenorhabditis elegans Hypothetical
           protein C23H5.7 protein.
          Length = 644

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +3

Query: 9   DVICFSKLNSLYE*NSTCKTQSRDDVICFSKLNLRNDVICL 131
           D+   S+L  L+E      T+       F KL + ND+ CL
Sbjct: 96  DIFVQSRLTYLHEGEEVKNTKKLRKNYFFQKLKVANDIFCL 136


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,750,897
Number of Sequences: 27780
Number of extensions: 96252
Number of successful extensions: 130
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 471339352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)