Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9d06
         (738 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    31   0.13 
SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces pomb...    30   0.40 
SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|ch...    26   4.9  
SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyc...    26   6.4  
SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyc...    26   6.4  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    26   6.4  

>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 513

 Score = 31.5 bits (68), Expect = 0.13
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +1

Query: 97  ECQICLEKIDDNGGIVAMPDTGMLNLEKMFHEQCIQRWRR 216
           EC IC+E    N  ++ +P       +  FHE CI+ W R
Sbjct: 395 ECTICMEMFKINDDVIQLP------CKHYFHENCIKPWLR 428


>SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 372

 Score = 29.9 bits (64), Expect = 0.40
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = +1

Query: 85  TCTTECQICLEKIDDNGGIVAMPDTGMLNLEKMFHEQCIQRW 210
           T   EC ICLE       +VA+P       +  FH  CI +W
Sbjct: 316 TFGVECVICLESFTKGDKVVALP------CKHEFHRPCIAKW 351


>SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 872

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 14/59 (23%), Positives = 27/59 (45%)
 Frame = +1

Query: 100 CQICLEKIDDNGGIVAMPDTGMLNLEKMFHEQCIQRWRREHTRDPFNRAIKYYFNFPPK 276
           C++ L +     G     D  +  L K    Q ++   + H +  F+RAI++  +F P+
Sbjct: 558 CKVSLARAKVFMGTSVPQDDDIKGLSKDLFVQLLRELGQGHLKHGFDRAIEHLSSFDPR 616


>SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 493

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 590 LKGVNFTEAQRSNLIGFLVEHI*NNVVI 507
           ++G+N  +    NL+ F VEH+ N+V I
Sbjct: 248 IQGLNCEKGSIGNLLCFAVEHVNNHVEI 275


>SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 381

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 367 VDKRACKRNQFRDRL*TLWFL 305
           ++KR C R  FRD+L +  FL
Sbjct: 58  INKRTCSRYSFRDKLTSFQFL 78


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
 Frame = +2

Query: 359  FINALHKKTPWT--LNSILGIFLKCNHDERMVRD--GRQPHQ-LCTER*FIFDK 505
            FIN +H  TPW   L S +   L  N     + +   + PHQ LC  R  +F+K
Sbjct: 3961 FINNIHLSTPWAEKLPSKMSNHLHKNSRIVCLSEIHNQLPHQLLCISRSIVFNK 4014


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,942,127
Number of Sequences: 5004
Number of extensions: 59493
Number of successful extensions: 141
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)