Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9d06
         (738 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47465| Best HMM Match : EGF_CA (HMM E-Value=2.4e-08)                31   1.3  
SB_6324| Best HMM Match : MCM (HMM E-Value=0)                          29   5.2  
SB_5137| Best HMM Match : Phage_integrase (HMM E-Value=0.11)           29   5.2  
SB_25237| Best HMM Match : Phage_integrase (HMM E-Value=0.2)           29   5.2  
SB_20050| Best HMM Match : RVT_1 (HMM E-Value=1.3e-07)                 28   6.9  

>SB_47465| Best HMM Match : EGF_CA (HMM E-Value=2.4e-08)
          Length = 263

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -3

Query: 184 TFFPSLTCQCRALPLCPRYRQFSQDISGILLC 89
           TF   +  +CR    CPRY Q S+++SG ++C
Sbjct: 108 TFCAYIAGECRCSENCPRYSQ-SRNVSGSIIC 138


>SB_6324| Best HMM Match : MCM (HMM E-Value=0)
          Length = 1592

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = -1

Query: 165  HASVGHCHYAPVIVNFLKTYLAFCCARWPIIFK*FEHIVISVF 37
            H++    HY P+ +N ++ Y+A C  + PI+       ++S +
Sbjct: 981  HSAHPPSHYDPLDMNLMRRYIAACKEKQPIVPGELSDYIVSAY 1023


>SB_5137| Best HMM Match : Phage_integrase (HMM E-Value=0.11)
          Length = 834

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 16/60 (26%), Positives = 28/60 (46%)
 Frame = +1

Query: 214 REHTRDPFNRAIKYYFNFPPKTLEECNAMLRETKGFIGDHEIDCVYKRVYQRVTQEDALD 393
           R H  +    AI+  F      +EEC   L   K  I  H     Y+R+ +++TQ++ ++
Sbjct: 693 RHHWTEKEEEAIEMVFK---GAIEECKLRLDAVKQEIPKHPPSGAYRRLEEKMTQQEKME 749


>SB_25237| Best HMM Match : Phage_integrase (HMM E-Value=0.2)
          Length = 845

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 16/60 (26%), Positives = 28/60 (46%)
 Frame = +1

Query: 214 REHTRDPFNRAIKYYFNFPPKTLEECNAMLRETKGFIGDHEIDCVYKRVYQRVTQEDALD 393
           R H  +    AI+  F      +EEC   L   K  I  H     Y+R+ +++TQ++ ++
Sbjct: 660 RHHWTEKEEEAIEMVFK---GAIEECKLRLDAVKQEIPKHPPSGAYRRLEEKMTQQEKME 716


>SB_20050| Best HMM Match : RVT_1 (HMM E-Value=1.3e-07)
          Length = 493

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +1

Query: 559 LCASVKLTPFKPMRPPKPMQCWIHPRRANCKVTRPRNNYSDP 684
           +C S   +  +PM P   +  W+  RRA    TRP  NY+ P
Sbjct: 40  VCHSRHRSTIRPMVPGGLLSMWLLERRAPTHKTRP--NYTSP 79


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,430,041
Number of Sequences: 59808
Number of extensions: 455894
Number of successful extensions: 1064
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1064
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)