Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc9d05
(703 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12291| Best HMM Match : Exo_endo_phos (HMM E-Value=1.8e-09) 30 2.1
SB_56915| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_33594| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_4921| Best HMM Match : Myosin_head (HMM E-Value=7.39998e-41) 29 4.8
SB_42091| Best HMM Match : E-MAP-115 (HMM E-Value=9.5) 28 6.4
SB_47685| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
SB_8055| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
SB_35453| Best HMM Match : Pyr_redox (HMM E-Value=0.044) 28 8.4
SB_8890| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
>SB_12291| Best HMM Match : Exo_endo_phos (HMM E-Value=1.8e-09)
Length = 843
Score = 29.9 bits (64), Expect = 2.1
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +2
Query: 296 SSRCTSRSKPPATDI*CSLKSLILASVIQFTKLWSAVEGTS 418
++R +S+ PP T C +KS + + KLW+ S
Sbjct: 770 ATRVSSKLHPPPTTFICGIKSFLKMCISSLNKLWTGTRKRS 810
>SB_56915| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 720
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/42 (30%), Positives = 18/42 (42%)
Frame = +1
Query: 178 SYKDAMRCKEHICRHGYSYETFYRVDANEMRSINVDPHSVFE 303
+Y+ +C + C H SY F R D E P +FE
Sbjct: 405 TYQSDCQCNDPACEHKGSYRAFKRPDHEENTPPQPPPRKLFE 446
>SB_33594| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 566
Score = 29.1 bits (62), Expect = 3.6
Identities = 17/48 (35%), Positives = 19/48 (39%)
Frame = +1
Query: 166 NFTYSYKDAMRCKEHICRHGYSYETFYRVDANEMRSINVDPHSVFEMH 309
NF S + + C R YSY Y V A E R I FE H
Sbjct: 369 NFALSSRRRLLCNGLYQRCEYSYNWIYPVKAGEQREILATDAKDFEAH 416
>SB_4921| Best HMM Match : Myosin_head (HMM E-Value=7.39998e-41)
Length = 1017
Score = 28.7 bits (61), Expect = 4.8
Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 4/84 (4%)
Frame = +1
Query: 124 VIWLLACVCTVRTDNFTYSYKDAMRCKEHICRHGYSYETFYRVDANEMRSINVDPHS--- 294
++W + R D T A+ C E I S YRV +++ I+V P
Sbjct: 824 IVWSDNVLKVHRKDGKTVPRVLAVTCSEFIVADPKSMSAKYRVSLGDVQKISVSPLKDGL 883
Query: 295 -VFEMHIAIQAASNGHIVLSEIPN 363
VF + I AS + S++PN
Sbjct: 884 VVFHVRPNIFVASVDLALHSDVPN 907
>SB_42091| Best HMM Match : E-MAP-115 (HMM E-Value=9.5)
Length = 274
Score = 28.3 bits (60), Expect = 6.4
Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Frame = -1
Query: 241 KFRSCNRVYRYAL-YSASHLCNYK*NYPF*LYTHTRVTRLRTQSVSFYQLITFNKKEI*T 65
K R+ + V YAL + L Y+ Y Y + TR RT + Y+ T N T
Sbjct: 130 KERTLSHVLLYALMWLRVVLLRYR-TYSTTRYRTYKATRYRTNNALRYR--TNNTTRYRT 186
Query: 64 IFYLLKKRNKSTRFRTANTT 5
+ N +TR+RT NTT
Sbjct: 187 YNTTRYRTNNATRYRTYNTT 206
>SB_47685| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 69
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = -3
Query: 641 ASTPFQAAKLKYFTDNGSTSLKLIKGSTCPSLPNSTRPSSDI 516
+S P+Q +L Y T GST S+C L R S DI
Sbjct: 17 SSVPYQLLQLNYRTSLGSTCADSGITSSCTQLGQGERRSLDI 58
>SB_8055| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 274
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = -3
Query: 641 ASTPFQAAKLKYFTDNGSTSLKLIKGSTCPSLPNSTRPSSDI 516
+S P+Q +L Y T GST S+C L R S DI
Sbjct: 140 SSVPYQLLQLNYRTSLGSTCADSGITSSCTQLGQGERRSLDI 181
>SB_35453| Best HMM Match : Pyr_redox (HMM E-Value=0.044)
Length = 189
Score = 27.9 bits (59), Expect = 8.4
Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 12/116 (10%)
Frame = +1
Query: 391 IVVGGGGNKFTELRRNLRRNAKSSVT------TPQILSPIE-----LRGFYIKIS-EDGL 534
IV+GGG + ++R++AKS VT +P+ SP R F ++ E+
Sbjct: 24 IVIGGGDTGVDCIATSVRQDAKSIVTFELLAESPESRSPNNPWPTWPRVFRVEYGHEEVA 83
Query: 535 VEFGREGQVLPLISFNDVDPLSVKYFSFAAWNGVEAKFLYDCPIPGDTSIEDIPNS 702
+++GR+ ++ ++S + LS A VE K++ D P G IE++PNS
Sbjct: 84 IKYGRDPRIYNIMS---KEFLSNDKGHVRAIKAVEIKWVKD-P-SGRWVIEEVPNS 134
>SB_8890| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 117
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = -3
Query: 641 ASTPFQAAKLKYFTDNGSTSLKLIKGSTCPSLPNSTRPSSDI 516
+S P+Q +L Y T GST S+C L R S DI
Sbjct: 17 SSVPYQLLQLNYRTSLGSTCADSGITSSCTQLGQGERRSLDI 58
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,784,040
Number of Sequences: 59808
Number of extensions: 472383
Number of successful extensions: 1496
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1496
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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