Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9d04
         (328 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32355| Best HMM Match : Laminin_EGF (HMM E-Value=0)                 31   0.22 
SB_59636| Best HMM Match : Ins_element1 (HMM E-Value=4.6)              30   0.51 
SB_49934| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.6  
SB_3931| Best HMM Match : GA (HMM E-Value=3.9)                         26   6.3  
SB_3046| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   6.3  

>SB_32355| Best HMM Match : Laminin_EGF (HMM E-Value=0)
          Length = 1358

 Score = 31.1 bits (67), Expect = 0.22
 Identities = 20/99 (20%), Positives = 45/99 (45%), Gaps = 3/99 (3%)
 Frame = +3

Query: 6    NDVICFSKLNSLYE*NSTCKTQSRDDVICFSKLNLRND---VICLNSLYE*NSTCKTQSR 176
            +D+   +K+N L++     K     D+   +K+N+ +D   V  +N  ++     K    
Sbjct: 1165 HDMTLVAKVNVLHDMTLVAKVNVSHDMTLVAKVNVSHDMTLVAKVNVSHDMTLVAKVNVS 1224

Query: 177  DDVICFSKLNLRNDVICFSKLNSLYE*NSTCKTQSRDDV 293
             D+   +K+N+ +D+   +K+N  ++     K     D+
Sbjct: 1225 HDMTLVAKVNVSHDMTLVAKVNVSHDMTLVAKVNVSHDM 1263



 Score = 29.9 bits (64), Expect = 0.51
 Identities = 20/99 (20%), Positives = 44/99 (44%), Gaps = 3/99 (3%)
 Frame = +3

Query: 6    NDVICFSKLNSLYE*NSTCKTQSRDDVICFSKLNLRND---VICLNSLYE*NSTCKTQSR 176
            +D+   +K+N  ++     K     D+   +K+N+ +D   V  +N  ++     K    
Sbjct: 1249 HDMTLVAKVNVSHDMTLVAKVNVSHDMTLVAKVNVSHDMTLVAKVNVSHDMTLVAKVNVS 1308

Query: 177  DDVICFSKLNLRNDVICFSKLNSLYE*NSTCKTQSRDDV 293
             D+   +K+N+ +D+   +K+N  +E     K     D+
Sbjct: 1309 HDMTLVAKVNMSHDMSLVAKVNVSHEMTLVAKVNVSHDM 1347



 Score = 26.6 bits (56), Expect = 4.8
 Identities = 17/82 (20%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
 Frame = +3

Query: 57   TCKTQSRDDVICFSKLNLRND---VICLNSLYE*NSTCKTQSRDDVICFSKLNLRNDVIC 227
            + K     D+   +K+N+ +D   V  +N L++     K     D+   +K+N+ +D+  
Sbjct: 1146 SAKVNVSHDMTLVAKVNVSHDMTLVAKVNVLHDMTLVAKVNVSHDMTLVAKVNVSHDMTL 1205

Query: 228  FSKLNSLYE*NSTCKTQSRDDV 293
             +K+N  ++     K     D+
Sbjct: 1206 VAKVNVSHDMTLVAKVNVSHDM 1227


>SB_59636| Best HMM Match : Ins_element1 (HMM E-Value=4.6)
          Length = 194

 Score = 29.9 bits (64), Expect = 0.51
 Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 9/91 (9%)
 Frame = +3

Query: 51  NSTCKTQSRDDVICFSKLNLRNDVICLNSLYE*NSTCKTQSRDDVICFSKLNLRNDVIC- 227
           N TCK  +  D +    +   ++V C       N TCK  + DD +    +   ++V C 
Sbjct: 30  NVTCKLMASHDNVTCKYMTSDDNVTCKLMASHDNVTCKYMTSDDSVTRKLMASHDNVTCK 89

Query: 228 --------FSKLNSLYE*NSTCKTQSRDDVI 296
                     KL + ++ N TCK  + DD +
Sbjct: 90  IMASNDSVTRKLMASHD-NVTCKYMTSDDSV 119



 Score = 28.7 bits (61), Expect = 1.2
 Identities = 15/59 (25%), Positives = 25/59 (42%)
 Frame = +3

Query: 51  NSTCKTQSRDDVICFSKLNLRNDVICLNSLYE*NSTCKTQSRDDVICFSKLNLRNDVIC 227
           N TCK  +  D +    +   ++V C       N TCK  + DD +    +   ++V C
Sbjct: 8   NVTCKLMASHDNVTCKYMTSDDNVTCKLMASHDNVTCKYMTSDDNVTCKLMASHDNVTC 66


>SB_49934| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 221

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 30/97 (30%), Positives = 42/97 (43%)
 Frame = +3

Query: 3   RNDVICFSKLNSLYE*NSTCKTQSRDDVICFSKLNLRNDVICLNSLYE*NSTCKTQSRDD 182
           + D  C S   SL   N      SRDD+     L+  NDV  L+S    N      SRD+
Sbjct: 72  KEDEECRSLRGSLSSRNDVDDRSSRDDM---DDLSPFNDVDGLSSR---NDVDDRSSRDE 125

Query: 183 VICFSKLNLRNDVICFSKLNSLYE*NSTCKTQSRDDV 293
           V   S  N  +D+   + +++L   N      SR+DV
Sbjct: 126 VDNLSSRNNVDDLSSRNDVDNLSSRNKVDGLSSRNDV 162


>SB_3931| Best HMM Match : GA (HMM E-Value=3.9)
          Length = 288

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +1

Query: 40  FTSRILRVKHNQGMMSFVFQN*I*EMMSFV*TRFTSRILRVKHN 171
           F +R++R K+N  +    F N + E  S V   F +R++R K+N
Sbjct: 184 FNNRLVRKKNNSAVTK-AFNNRLGEEDSTVTKAFNNRLVREKNN 226


>SB_3046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 734

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
 Frame = +3

Query: 42  YE*NSTCKTQSRDDVICFSKLNLRNDVICLNSLYE*NSTCKTQSRDDVICFSKLNLRNDV 221
           Y+  ST +  +R D   +   + R D++     Y   ST     R D++  ++ + R D+
Sbjct: 101 YDIVSTTRYDTRYDTTQYDTRSTRYDIVSTTQ-YNTRST-----RYDIVSTTQYDTRYDI 154

Query: 222 ICFSKLNSLYE*NSTCK--TQS-RDDVI 296
           +  ++ N+ Y+  ST +  TQS R D++
Sbjct: 155 VSTTQYNTRYDIVSTTQYDTQSTRYDIV 182


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,311,461
Number of Sequences: 59808
Number of extensions: 139883
Number of successful extensions: 161
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 450550116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)