Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9c20
         (434 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q86QT4 Cluster: Putative uncharacterized protein; n=1; ...    50   3e-05
UniRef50_A2C1Q9 Cluster: Putative uncharacterized protein; n=1; ...    32   4.6  

>UniRef50_Q86QT4 Cluster: Putative uncharacterized protein; n=1;
           Bombyx mori|Rep: Putative uncharacterized protein -
           Bombyx mori (Silk moth)
          Length = 47

 Score = 49.6 bits (113), Expect = 3e-05
 Identities = 23/26 (88%), Positives = 23/26 (88%)
 Frame = +1

Query: 304 LKLENGWTDLANFGLELFVEVQRRFK 381
           LKLENGWTDLANFGLEL VEVQR  K
Sbjct: 20  LKLENGWTDLANFGLELPVEVQRGLK 45


>UniRef50_A2C1Q9 Cluster: Putative uncharacterized protein; n=1;
           Prochlorococcus marinus str. NATL1A|Rep: Putative
           uncharacterized protein - Prochlorococcus marinus
           (strain NATL1A)
          Length = 299

 Score = 32.3 bits (70), Expect = 4.6
 Identities = 13/30 (43%), Positives = 21/30 (70%)
 Frame = +3

Query: 6   DFVHAKR*RAF*KNKIKFKKGLNIEAIAFN 95
           DF+H K  RAF  N + F++G+NIE  +++
Sbjct: 265 DFIHEKAKRAFNYNPLSFEEGINIEIESYH 294


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 366,099,770
Number of Sequences: 1657284
Number of extensions: 6417359
Number of successful extensions: 14772
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 14554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14770
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 21496989549
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)