Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9c20
         (434 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo...    27   1.2  
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos...    27   1.2  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    25   3.8  
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei...    25   6.7  

>SPBC215.01 ||SPBC3B9.20|GTPase activating
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = -2

Query: 172 SEDTKARVLPHNYVS*LFSKLQRETTLKAIASIFKPFLNLILFF*KARYL 23
           +EDT    +  NY S L  K  ++ T K +ASI K  L L+  F K  ++
Sbjct: 431 TEDTMLISILKNYFSSLGDKAYKDATDKRVASITKFQLLLVTAFKKFSHI 480


>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -2

Query: 247 NAFARKPTVLRKVIRAITTGLNSG 176
           +AFAR PTV    ++A+TTG   G
Sbjct: 85  SAFARSPTVTMPRLKALTTGTIPG 108


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
           Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = -1

Query: 344 PKLAKSVQPFSSFSETNEQQFIF 276
           P+L +S++P+ S  + + Q+FIF
Sbjct: 920 PQLVRSLKPYISVLKQDHQEFIF 942


>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 945

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 320 AGPIWLILVLNYLWKSRE 373
           +GPIW +   N  W+SRE
Sbjct: 917 SGPIWQLKKENNYWESRE 934


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,547,190
Number of Sequences: 5004
Number of extensions: 27808
Number of successful extensions: 51
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)