Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9c20
         (434 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0056 - 20561645-20561920,20562024-20562611,20562698-205630...    27   8.7  
04_04_0433 + 25163111-25163471,25163943-25164154,25164420-251647...    27   8.7  

>09_06_0056 -
           20561645-20561920,20562024-20562611,20562698-20563055,
           20563149-20563483,20563593-20563633,20563722-20563932,
           20564289-20564348,20564432-20564457,20565066-20565264
          Length = 697

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -1

Query: 284 FIFIIIKLSLFPERFRSQAHCAS*SDPRHHDGPQ 183
           F+F++     F  R     H AS SDP+  +G Q
Sbjct: 42  FLFVLAPSIFFVARNGGHVHVASGSDPKDREGNQ 75


>04_04_0433 +
           25163111-25163471,25163943-25164154,25164420-25164701,
           25164794-25164916,25165511-25165664,25165754-25165965,
           25166143-25166212,25166294-25166424
          Length = 514

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +3

Query: 192 VVMARITLRSTVGLRAKAFWKQR*FNNNKNELLFVSLAKTRERLDRF 332
           V++AR   R  + L  +A W+ R F +   ++LF+    +RE +  F
Sbjct: 230 VIVARTDSRQALSLD-EALWRVRAFADAGADVLFIDALASREEMKAF 275


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,301,167
Number of Sequences: 37544
Number of extensions: 162021
Number of successful extensions: 370
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 370
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)