Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9c20
         (434 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   2.6  
AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.           22   3.4  
AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.           22   3.4  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   7.9  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -2

Query: 247  NAFARKPTVLRKVIRAITTGLNSGNSEDTKARVLPHNYVS 128
            +A+    TV    + A  T ++SG+SED +  +  H Y S
Sbjct: 1298 HAYRDAVTVPGNNLIATNTTVSSGSSEDHRRPLSEHIYSS 1337


>AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 11/33 (33%), Positives = 14/33 (42%)
 Frame = -1

Query: 317 FSSFSETNEQQFIFIIIKLSLFPERFRSQAHCA 219
           F  + E       F+   L+  P   R QAHCA
Sbjct: 55  FKKYPEYQRYFTAFMDTPLNELPANKRFQAHCA 87


>AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 11/33 (33%), Positives = 14/33 (42%)
 Frame = -1

Query: 317 FSSFSETNEQQFIFIIIKLSLFPERFRSQAHCA 219
           F  + E       F+   L+  P   R QAHCA
Sbjct: 55  FKKYPEYQRYFTAFMDTPLNELPANKRFQAHCA 87


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 402  HFHIYLPFKPSLD 364
            + H+Y P K SLD
Sbjct: 998  NLHVYAPLKISLD 1010


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,334
Number of Sequences: 438
Number of extensions: 1925
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11368164
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)