Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc9c17
(435 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb... 30 0.18
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 29 0.41
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 1.6
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 26 2.2
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 25 3.8
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei... 25 3.8
SPBC26H8.09c |snf59||SWI/SNF complex subunit Snf59|Schizosacchar... 25 3.8
SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces... 25 5.0
SPAC19G12.02c |pms1||MutL family mismatch-repair protein Pms1|Sc... 25 6.7
SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr... 25 6.7
SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera... 24 8.8
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch... 24 8.8
SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyc... 24 8.8
>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 929
Score = 29.9 bits (64), Expect = 0.18
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Frame = +3
Query: 207 ITMPKGK--RKGKYEHRRTEQEYSSEEDAGIDMTNDNYSETSGQSDLXSIHDEGENDSQE 380
+ P+GK RKGK + EE AG D ++ G S + D+ E DS E
Sbjct: 10 LPQPQGKHQRKGKKQLENKILHSYEEESAGFDSEELEDNDEQGYSFGVNSEDDEEIDSDE 69
Query: 381 KLEEK 395
+E+
Sbjct: 70 AFDEE 74
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 28.7 bits (61), Expect = 0.41
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +3
Query: 243 EHRRTEQEYSSEEDAGIDMTNDNYSETSGQSDLXSIHDEGENDSQEK 383
E E+E SEED+ + +++ SE+ +S+ S E E+D E+
Sbjct: 86 ESSEEEEETESEEDSEVSDESESESESESESEEES-ESEEESDESER 131
Score = 27.1 bits (57), Expect = 1.2
Identities = 15/62 (24%), Positives = 27/62 (43%)
Frame = +3
Query: 207 ITMPKGKRKGKYEHRRTEQEYSSEEDAGIDMTNDNYSETSGQSDLXSIHDEGENDSQEKL 386
+ +PK K E ++ E S EE+ + S+ S E E++S+E+
Sbjct: 67 VEVPKKKAVAASEDSESDSESSEEEEETESEEDSEVSDESESESESESESEEESESEEES 126
Query: 387 EE 392
+E
Sbjct: 127 DE 128
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 26.6 bits (56), Expect = 1.6
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +3
Query: 225 KRKGKYEHRRTEQEYSSEEDAGIDMTNDNYSETSGQSDLXSIHDEGENDSQEK-LEEK 395
++ GK + +EQE +DA D + YS +S+ + E D + K +EE+
Sbjct: 351 QKPGKSQGEISEQEEDEYDDAESDEMHSPYSTHEPESEPEDQDEPSEKDDENKDVEEE 408
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 26.2 bits (55), Expect = 2.2
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +3
Query: 291 IDMTNDNYSETSGQSDLXSIHDEGENDSQEKLEEK 395
ID T ++SE Q + + +E D EK++E+
Sbjct: 166 IDRTKRHFSELFTQKQMLQLQNENFKDDYEKIKEE 200
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 25.4 bits (53), Expect = 3.8
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = +3
Query: 225 KRKGKYEHRRTEQEYSSEEDAGIDMTNDNYS-ETSGQSDLXSIHDEGENDSQEKLEEKVL 401
K +GK R SE+ A +D+ + N S ETS + E +++ ++ +
Sbjct: 111 KGEGKRSKNRKRSSKHSEKQA-VDLKSSNSSQETSSSKGSVNNKSERSREAKSRMPKNSK 169
Query: 402 EIIDGL 419
EI GL
Sbjct: 170 EIKKGL 175
>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1462
Score = 25.4 bits (53), Expect = 3.8
Identities = 18/63 (28%), Positives = 29/63 (46%)
Frame = +3
Query: 240 YEHRRTEQEYSSEEDAGIDMTNDNYSETSGQSDLXSIHDEGENDSQEKLEEKVLEIIDGL 419
Y T QE+ S+ + N + S S Q+DL H +GE E + +E +GL
Sbjct: 835 YSKSSTHQEHLSKN---LPTLNTSSSSNSSQTDLLVPHGKGETKETEM--QSPIESKEGL 889
Query: 420 SAR 428
++
Sbjct: 890 LSK 892
>SPBC26H8.09c |snf59||SWI/SNF complex subunit
Snf59|Schizosaccharomyces pombe|chr 2|||Manual
Length = 515
Score = 25.4 bits (53), Expect = 3.8
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +3
Query: 276 EEDAGIDMTNDNYSETSGQSDLXSIHDEGENDSQEK 383
EED ++ ++D E SG+S+ +I + +D+ K
Sbjct: 3 EEDITLEHSDDLNKEESGESNRVNIEEPEHHDNSNK 38
>SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 693
Score = 25.0 bits (52), Expect = 5.0
Identities = 10/33 (30%), Positives = 16/33 (48%)
Frame = +1
Query: 184 FSEFNYRKSPCLKGKEKENTSTEEPSKSIPQKK 282
F E R PCL+ + N E+P+ +P +
Sbjct: 600 FPEDKPRHIPCLEARPSPNRIQEQPNIDVPSTR 632
>SPAC19G12.02c |pms1||MutL family mismatch-repair protein
Pms1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 794
Score = 24.6 bits (51), Expect = 6.7
Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 2/85 (2%)
Frame = +1
Query: 187 SEFNYRKSPCLKGKEKENTSTEEPSKSIPQKKXXXXXXXXXXXXRHLDSLTSRASMMKAK 366
S F+Y++SPC K K E T+ S S+ + DS+ + + +
Sbjct: 380 SSFSYKRSPC-KRKLVEATAQPAISTSVAEGASLAQVSKPLPERLQKDSMRRSSPLNEKV 438
Query: 367 TTVKRSWKRK--CWRSSTG*ALVRT 435
T K+K + SST ++ +T
Sbjct: 439 TASSERMKKKLALFASSTDTSMQKT 463
>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 501
Score = 24.6 bits (51), Expect = 6.7
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = +1
Query: 130 LSEKRRKYLENLVKLCFAFSEFNYRKSPCLKGKEKENTSTEEPSKSIPQK 279
L E +EN+V+L F+ + LKG E S + + +IP++
Sbjct: 192 LKELEPDRVENVVRLLQMQIRFHQKSLDLLKGLEMNGFSKKRDNVNIPKR 241
>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
isomerase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 361
Score = 24.2 bits (50), Expect = 8.8
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = +3
Query: 258 EQEYSSEEDAGIDMTNDNYSETSGQSDLXSIHDEGENDSQEKLEE 392
E+E S+ED + T ++ ET + E E++S + +E
Sbjct: 128 EEEEESDEDYDLSPTEEDLVETVSGDEESEEESESEDNSASEEDE 172
>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 764
Score = 24.2 bits (50), Expect = 8.8
Identities = 10/37 (27%), Positives = 21/37 (56%)
Frame = +3
Query: 216 PKGKRKGKYEHRRTEQEYSSEEDAGIDMTNDNYSETS 326
PKG+RK +H + + +++SE + +++ E S
Sbjct: 597 PKGRRKKITKHTKKKNKHASETSVAPEKVDNSSIEQS 633
>SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 24.2 bits (50), Expect = 8.8
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 330 QSDLXSIHDEGENDSQEKLEEKVLE 404
+++L +D E D EKLE+K L+
Sbjct: 125 ENELAERNDIPEEDEMEKLEQKTLD 149
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,500,070
Number of Sequences: 5004
Number of extensions: 26050
Number of successful extensions: 117
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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