Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9c17
         (435 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-lik...    24   0.85 
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   1.5  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    23   1.5  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   2.6  

>AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-like
           protein protein.
          Length = 130

 Score = 23.8 bits (49), Expect = 0.85
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -2

Query: 86  FGPRMKHKTEISEKLXNMFNRVTCTLD 6
           FGP  K + E++EK+ N  N + C L+
Sbjct: 81  FGPVPKFEGEMAEKISNELNEM-CPLE 106


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 223 GKEKENTSTEEPSKSI 270
           G +KEN  TEEP+  +
Sbjct: 310 GSDKENHKTEEPNDEV 325


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = +1

Query: 157 ENLVKLCFAFSEFNYRKSPCLKGKEKENTSTEE 255
           ENLV+ CF  ++  Y       G   E T  +E
Sbjct: 197 ENLVQACFQQAQTTYVTKEVATGTASEITQIQE 229


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +1

Query: 166 VKLCFAFSEFNYRKSPCLKGKEKENTSTEEP 258
           +++   FSEF Y   P  +  E  + S +EP
Sbjct: 523 LRMILYFSEFAYLGKPTKEDSEWPSYSRDEP 553


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,695
Number of Sequences: 438
Number of extensions: 1732
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11368164
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)