Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc9c16
(705 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyc... 198 5e-52
SPAC23D3.07 |pup1||20S proteasome component beta 2|Schizosacchar... 85 7e-18
SPAC4A8.13c |pts1||20S proteasome component beta 5|Schizosacchar... 64 1e-11
SPAC22F8.06 |pam1||20S proteasome component beta 6|Schizosacchar... 42 1e-04
SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyce... 38 0.001
SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyc... 29 0.49
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 29 0.49
SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr 1|... 26 6.0
SPAC13F5.06c |sec10||exocyst complex subunit Sec10|Schizosacchar... 26 6.0
SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|c... 26 6.0
>SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 198 bits (484), Expect = 5e-52
Identities = 89/176 (50%), Positives = 125/176 (71%)
Frame = +1
Query: 178 GTSIMACEFDGGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSAADTQAIADIV 357
GT+I A + GV++ ADSRTT GAYIANRVTDKLT++TD I+CCRSGSAADTQ +AD++
Sbjct: 24 GTTITALRYKDGVILAADSRTTMGAYIANRVTDKLTQLTDNIWCCRSGSAADTQTVADLL 83
Query: 358 TYHLNFHKMELGDPPLVETAAAIFRELCYNYRDSLMAGILVAGWDKKKGAQIYSIPIGGM 537
Y+L+ ++++ G P V TAA + E+CY ++ L AG++VAG+D+K G +YSIP+GG
Sbjct: 84 KYYLSMYRIQFGHDPSVHTAATLASEMCYQNKNMLSAGLIVAGYDEKTGGDVYSIPLGGS 143
Query: 538 VQRQAXXXXXXXXXXXXXXXDANFKPNMTKEEAKKFVTDTLTLAILRDGSSGGVVR 705
+ +Q DANF+ NMT+EEA +F+ + + LA+ RDGSSGG +R
Sbjct: 144 LHKQPLAIGGSGSAFIYGFCDANFRENMTQEEAVEFLKNAVALAMERDGSSGGTIR 199
>SPAC23D3.07 |pup1||20S proteasome component beta
2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 267
Score = 85.4 bits (202), Expect = 7e-18
Identities = 45/174 (25%), Positives = 87/174 (50%)
Frame = +1
Query: 172 STGTSIMACEFDGGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSAADTQAIAD 351
STGT+I+ +V+GAD+R T G IA++ KL I+ I+C +G+AADT+ +
Sbjct: 33 STGTTIVGVIAKDCIVLGADTRATAGPIIADKNCKKLHLISPNIWCAGAGTAADTEFVTS 92
Query: 352 IVTYHLNFHKMELGDPPLVETAAAIFRELCYNYRDSLMAGILVAGWDKKKGAQIYSIPIG 531
+++ ++ H + P V TA + ++ + Y+ + A +++ G+D KG +++I
Sbjct: 93 MISSNIELHSLYTNRKPRVVTALTMLKQHLFRYQGHIGAYLVLGGYD-CKGPHLFTIAAH 151
Query: 532 GMVQRQAXXXXXXXXXXXXXXXDANFKPNMTKEEAKKFVTDTLTLAILRDGSSG 693
G + + ++P++ + EA + V + + I D SG
Sbjct: 152 GSSDKLPYVALGSGSLAAISVLETKYQPDLERHEAMELVKEAIEAGIFNDLGSG 205
>SPAC4A8.13c |pts1||20S proteasome component beta
5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 272
Score = 64.5 bits (150), Expect = 1e-11
Identities = 44/176 (25%), Positives = 78/176 (44%), Gaps = 1/176 (0%)
Frame = +1
Query: 178 GTSIMACEFDGGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSAADTQAIADIV 357
GT+ +A + G+V+ DSR + G IA++ K+ +I + +G AAD Q ++
Sbjct: 61 GTTTLAFRYQHGIVVCVDSRASAGPLIASQTVKKVIEINPYLLGTLAGGAADCQFWETVL 120
Query: 358 TYHLNFHKMELGDPPLVETAAAIFRELCYNYRD-SLMAGILVAGWDKKKGAQIYSIPIGG 534
H++ + V A+ I + Y+Y+ L G ++AG K G +Y I G
Sbjct: 121 GMECRLHQLRNKELISVSAASKILSNITYSYKGYGLSMGTMLAG-TGKGGTALYYIDSDG 179
Query: 535 MVQRQAXXXXXXXXXXXXXXXDANFKPNMTKEEAKKFVTDTLTLAILRDGSSGGVV 702
+ D+ ++ +++K+EA ++ A RD SGG V
Sbjct: 180 TRLKGDLFSVGSGSTFAYGVLDSGYRWDLSKQEALYLAQRSIVAATHRDAYSGGSV 235
>SPAC22F8.06 |pam1||20S proteasome component beta
6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 225
Score = 41.5 bits (93), Expect = 1e-04
Identities = 30/125 (24%), Positives = 53/125 (42%), Gaps = 1/125 (0%)
Frame = +1
Query: 178 GTSIMACEFDGGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSAADTQAIADIV 357
G + +A DG ++ D+R+ G I R ++ ++ D + SG AD A+ +
Sbjct: 13 GGTTVAIAGDGFAILAGDTRSVNGYNINTRFQPRVHEVGDDLVIGASGFEADALALVKRI 72
Query: 358 TYHLNFHKMELGDPPLVETAAAIFRELCYNYRD-SLMAGILVAGWDKKKGAQIYSIPIGG 534
++ + ++ A + R L Y R VAG DK+ +IYS G
Sbjct: 73 QQRIDLYHDNHERKMSAQSCACMVRTLLYGKRFFPYYVYTTVAGIDKEGKGEIYSFDPVG 132
Query: 535 MVQRQ 549
+R+
Sbjct: 133 SYERE 137
>SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 262
Score = 38.3 bits (85), Expect = 0.001
Identities = 20/60 (33%), Positives = 32/60 (53%)
Frame = +1
Query: 166 PHSTGTSIMACEFDGGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSAADTQAI 345
P TG+S++A +F GV+I AD+ + G+ ++LTK+ D G +D Q I
Sbjct: 39 PIVTGSSVLALKFADGVMIAADNLASYGSLARFYDVERLTKVGDNTIVGAGGDISDYQQI 98
>SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 29.5 bits (63), Expect = 0.49
Identities = 29/167 (17%), Positives = 58/167 (34%), Gaps = 6/167 (3%)
Frame = +1
Query: 178 GTSIMACEFDGGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSAADTQAIADIV 357
GT+ +A + +VIG + + + K+ + + + +G AD + + D
Sbjct: 30 GTTAIALRGNECIVIGVERKNVPKLQNVSNF-QKIAMVDNHVCLAFAGLNADARILIDKA 88
Query: 358 TYHLNFHKMELGDPPLVETAAAIFRELCYNYRDS-----LMAGILVAGWDKKKGA-QIYS 519
HK+ L DP +E + Y S L+AG+D ++Y
Sbjct: 89 RVEAQNHKLNLADPVSIEYLTRYVAGVQQKYTQSGGVRPFGVSTLIAGFDVGDNTPRVYQ 148
Query: 520 IPIGGMVQRQAXXXXXXXXXXXXXXXDANFKPNMTKEEAKKFVTDTL 660
G+ + N+K ++++E +L
Sbjct: 149 TEPAGIYNAWKATAIGRASKAAREYLEKNWKEGLSRDETIHLAVSSL 195
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 29.5 bits (63), Expect = 0.49
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 205 DGGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCR 315
+ G+V+G DSR +Y+ +T+ T TDQI R
Sbjct: 521 ENGIVLGVDSRKKINSYVEKSLTEDETD-TDQIISSR 556
>SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 25.8 bits (54), Expect = 6.0
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +3
Query: 474 FSCWMGQKERSSNLLHTYWWYGA 542
F+ W+G S +L H +W +GA
Sbjct: 511 FAWWIGYGPHSFHLYHWWWTWGA 533
>SPAC13F5.06c |sec10||exocyst complex subunit
Sec10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 25.8 bits (54), Expect = 6.0
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +1
Query: 397 PPLVETAAAIFRELC 441
PPL++T +++F ELC
Sbjct: 284 PPLIQTLSSLFSELC 298
>SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 504
Score = 25.8 bits (54), Expect = 6.0
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -1
Query: 636 GFFLGHIGLEIGVNVAIDVGGSG 568
GFF G I IGV + + +GG+G
Sbjct: 109 GFFAGSICNLIGVKLTLAIGGTG 131
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,803,689
Number of Sequences: 5004
Number of extensions: 54182
Number of successful extensions: 140
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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