Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9c11
         (699 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    25   0.45 
AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory recept...    23   1.8  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    21   7.3  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   7.3  

>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 25.4 bits (53), Expect = 0.45
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +1

Query: 388 LTTSVVLHKYKFKQQVNAVKFSPDGKYFAVCCDNTVFVMTAPVH 519
           LT+SV LH   F   + A  F+    +FA+CCD    ++   VH
Sbjct: 54  LTSSVTLHVC-FNSYMYA--FTHIFFFFAICCDFIALIVVNIVH 94



 Score = 21.0 bits (42), Expect = 9.7
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -3

Query: 106 FY*ICS*YLKQLHKESH 56
           F  IC  YLK  HKE +
Sbjct: 18  FLLICDSYLKIYHKEKY 34


>AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory receptor
           candidate 34 protein.
          Length = 324

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +1

Query: 52  YGVILYAVVSNIKSKFNRI 108
           YG ++Y ++  IKSK+ ++
Sbjct: 142 YGFMIYLILDTIKSKYRQM 160


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = +1

Query: 577 EVTCLDWSSCSRLLAVGSKDTTTKIHTV 660
           EV+C+     S+L+  G+K  T  + ++
Sbjct: 109 EVSCISEEVWSKLIETGNKPPTLPVTSI 136


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 506 QHRYISPANTGPSS*NVSSRKP 571
           Q +  SP+NT  S+ + +S KP
Sbjct: 420 QPQITSPSNTNTSTSSTNSNKP 441


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,831
Number of Sequences: 336
Number of extensions: 3819
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)