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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9c11
         (699 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom...   153   3e-38
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac...    42   6e-05
SPBC15D4.14 |taf73||TATA-binding protein associated factor |Schi...    39   6e-04
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5...    39   6e-04
SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces ...    36   0.004
SPAC12B10.03 |||WD repeat protein, human WDR20 family|Schizosacc...    35   0.010
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac...    34   0.017
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c...    31   0.12 
SPAC9G1.05 |||actin cortical patch component Aip1 |Schizosacchar...    31   0.21 
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy...    30   0.28 
SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces pomb...    29   0.48 
SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit S...    29   0.64 
SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces pombe...    29   0.64 
SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces po...    28   1.5  
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi...    28   1.5  
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp...    27   2.0  
SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat protein|Schizo...    26   4.5  
SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|...    26   4.5  
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    26   6.0  
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    26   6.0  
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    26   6.0  
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc...    26   6.0  

>SPBC713.04c |||U3 snoRNP-associated protein
           Utp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 854

 Score =  153 bits (370), Expect = 3e-38
 Identities = 70/188 (37%), Positives = 113/188 (60%), Gaps = 1/188 (0%)
 Frame = +1

Query: 139 MKFNYKFQNLLGTVYRKGDVLFSKDGNCVISPVGNRITIYNLKQNKSNTLSFESHYNYTA 318
           MK  + F NL+GT++ KG+++F+ DG  ++SPVGNR+++YNLK N S T  FE+H N + 
Sbjct: 1   MKTEFGFSNLVGTIFSKGNLVFTPDGFSILSPVGNRVSVYNLKDNTSYTFPFENHKNISH 60

Query: 319 VDIAPNGMTLLAVTEKGEAQIISLTTSVVLHKYKFKQQVNAVKFSPDGKYFAVCCDNTVF 498
           + ++P    LL+V E+G   + +     VLH + FK  V A++FSP+GK+FAV     + 
Sbjct: 61  IALSPTSTLLLSVDEEGRCILCNFLRRSVLHYFNFKSPVGAIEFSPNGKFFAVSLGKLIQ 120

Query: 499 VMTAPVHF-TGEYRPFIMKRVFKKALDEVTCLDWSSCSRLLAVGSKDTTTKIHTVEYLEN 675
           V   P      E+ PF++ R +    D++  + WS+ SR     SKD T ++H+V+ +E 
Sbjct: 121 VWRTPNSLEEREFAPFVLHREYTGHFDDIVSISWSADSRFFISTSKDLTARLHSVDPIEG 180

Query: 676 ITMYSLSG 699
               +L+G
Sbjct: 181 FHPCALTG 188


>SPAC630.14c |tup12||transcriptional corepressor Tup12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 586

 Score = 42.3 bits (95), Expect = 6e-05
 Identities = 28/100 (28%), Positives = 54/100 (54%), Gaps = 2/100 (2%)
 Frame = +1

Query: 202 FSKDGNCVISPVGNR-ITIYNLKQNKSNTLSFESHYNYTAVDIAPNGMTLLAVTEKGEAQ 378
           FSKDG  ++S  G+R + +++++  +   L   +    T V  +P+G  + A +     +
Sbjct: 384 FSKDGKTLVSGSGDRTVCLWDVEAGEQK-LILHTDDGVTTVMFSPDGQFIAAGSLDKVIR 442

Query: 379 IISLTTSVVLHKYKFKQQVNAVKFSPDGKYF-AVCCDNTV 495
           I + + ++V   +  ++ V +V FSPDGKY  +   DNT+
Sbjct: 443 IWTSSGTLVEQLHGHEESVYSVAFSPDGKYLVSGSLDNTI 482



 Score = 30.7 bits (66), Expect = 0.21
 Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
 Frame = +1

Query: 403 VLHKYKFKQQVNAVKFSPDGKYFAVCCDNTVFVMTAPVHFTGEYRPFIMKRVFKKALD-E 579
           +LH  +    +  V+FS DGK+ A  C+    V       TG+    + +   K+  D  
Sbjct: 280 LLHTLEHTSVICYVRFSADGKFLATGCNRAAMVFNVE---TGKLITLLQEESSKREGDLY 336

Query: 580 VTCLDWSSCSRLLAVGSKDTTTKI 651
           V  + +S   + LA G +D   +I
Sbjct: 337 VRSVAFSPDGKYLATGVEDQQIRI 360


>SPBC15D4.14 |taf73||TATA-binding protein associated factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 39.1 bits (87), Expect = 6e-04
 Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 1/115 (0%)
 Frame = +1

Query: 319 VDIAPNGMTLLAVTEKGEAQIISLTTSVVLHKYK-FKQQVNAVKFSPDGKYFAVCCDNTV 495
           V I+P    +L+ +E G  ++ S  T   + KY      +  V+FSP G YFA    +  
Sbjct: 409 VSISPQKEFILSCSEDGFTRLWSKDTKSTIVKYAGHNAPIWDVQFSPFGYYFATASHD-- 466

Query: 496 FVMTAPVHFTGEYRPFIMKRVFKKALDEVTCLDWSSCSRLLAVGSKDTTTKIHTV 660
              TA +       P    RVF    ++V C+ +   +  LA GS D TT++  V
Sbjct: 467 --QTARLWDVEHAAPL---RVFVGHQNDVDCVSFHPNAAYLATGSSDHTTRMWDV 516


>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
           Taf72|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 643

 Score = 39.1 bits (87), Expect = 6e-04
 Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 1/122 (0%)
 Frame = +1

Query: 328 APNGMTLLAVTEKGEAQIISLTTSVVLHKYK-FKQQVNAVKFSPDGKYFAVCCDNTVFVM 504
           +P+   LL+ +E   A++ S+ T   L  YK     V  V F P G YFA    +     
Sbjct: 388 SPDNKYLLSCSEDASARLWSVDTKTALVAYKGHTGPVWDVAFGPFGHYFATASHD----Q 443

Query: 505 TAPVHFTGEYRPFIMKRVFKKALDEVTCLDWSSCSRLLAVGSKDTTTKIHTVEYLENITM 684
           TA +       P    RVF   L +V C+ +   S  +  GS D T ++  V    ++ +
Sbjct: 444 TAQLWSCDHIYPL---RVFAGHLSDVDCVTFHPNSAYVLTGSSDKTCRLWDVHRGHSVRV 500

Query: 685 YS 690
           ++
Sbjct: 501 FN 502


>SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 314

 Score = 36.3 bits (80), Expect = 0.004
 Identities = 30/126 (23%), Positives = 51/126 (40%), Gaps = 5/126 (3%)
 Frame = +1

Query: 298 SHYNYT----AVDIAPNGMTLLAVTEKGEAQIISLTTSVVLHKYKFKQQVNAVKFSPDGK 465
           SHY +T    AV I+P+G    +    G   +  L  S  L+  + K  +NA+ FSP+  
Sbjct: 187 SHYGHTGYVSAVTISPDGSLCASGGRDGTLMLWDLNESTHLYSLEAKANINALVFSPNRY 246

Query: 466 YFAVCCDNTVFVMTAPVHFTGEYRPFIMKRVFKKALD-EVTCLDWSSCSRLLAVGSKDTT 642
           +      +++ +         +        V KK+ + E   L WS   + L  G  D  
Sbjct: 247 WLCAATGSSIRIFDLETQEKVDELTVDFVGVGKKSSEPECISLTWSPDGQTLFSGWTDNL 306

Query: 643 TKIHTV 660
            ++  V
Sbjct: 307 IRVWQV 312


>SPAC12B10.03 |||WD repeat protein, human WDR20
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 35.1 bits (77), Expect = 0.010
 Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
 Frame = +1

Query: 415 YKF-KQQVNAVKFSPDGKYFAVCCDNTVFVMTAPVHFTGEYRPFIMKRVFKKALDEVTCL 591
           Y F K  +N   FSPD +Y A+  +     +     F  E+    +  VF      +TC+
Sbjct: 318 YAFSKSPINGFCFSPDYQYLALVSERGTLKL---FDFVKEH----VLDVFHSYFAGLTCV 370

Query: 592 DWSSCSRLLAVGSKDTTTKIHT 657
            WS   + +A+G KD    I++
Sbjct: 371 TWSPDGKFIAIGGKDDLVSIYS 392


>SPAC18B11.10 |tup11||transcriptional corepressor
           Tup11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 34.3 bits (75), Expect = 0.017
 Identities = 43/175 (24%), Positives = 73/175 (41%), Gaps = 6/175 (3%)
 Frame = +1

Query: 130 LVTMKFNYKFQNLLGTVYRKGDVLFSKDGNCVISPVGNRIT-IYNLKQNKSNTLSFESHY 306
           L T K  Y F      +Y    + FS +G  ++S  G+R   +++++  +   L  E   
Sbjct: 389 LSTQKVRYVFSGHEQDIY---SLDFSHNGRFIVSGSGDRTARLWDVETGQC-ILKLEIEN 444

Query: 307 NYTAVDIAPNGMTLLAVTEKGEAQIISLTTSVVLHKYKFKQQVNAVKFSPDGK-YFAVCC 483
             TA+ I+PN   +   +     ++ S++ ++V      K+ V ++ FSPD     +   
Sbjct: 445 GVTAIAISPNDQFIAVGSLDQIIRVWSVSGTLVERLEGHKESVYSIAFSPDSSILLSGSL 504

Query: 484 DNTVFV----MTAPVHFTGEYRPFIMKRVFKKALDEVTCLDWSSCSRLLAVGSKD 636
           D T+ V     T  V  +      I K  +    D V  +  S  SR    GSKD
Sbjct: 505 DKTIKVWELQATRSVGLSAIKPEGICKATYTGHTDFVLSVAVSPDSRWGLSGSKD 559



 Score = 28.7 bits (61), Expect = 0.85
 Identities = 20/77 (25%), Positives = 33/77 (42%)
 Frame = +1

Query: 433 VNAVKFSPDGKYFAVCCDNTVFVMTAPVHFTGEYRPFIMKRVFKKALDEVTCLDWSSCSR 612
           V  + FSPDGKY     ++    +        +     ++ VF     ++  LD+S   R
Sbjct: 363 VRTIAFSPDGKYLVTGTEDRQIKL-------WDLSTQKVRYVFSGHEQDIYSLDFSHNGR 415

Query: 613 LLAVGSKDTTTKIHTVE 663
            +  GS D T ++  VE
Sbjct: 416 FIVSGSGDRTARLWDVE 432



 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +1

Query: 403 VLHKYKFKQQVNAVKFSPDGKYFAVCCDNTVFV 501
           ++H  +    V  VKFS +GKY A  C+    V
Sbjct: 306 LVHTLEHPSVVCCVKFSNNGKYLATGCNQAANV 338


>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 502

 Score = 31.5 bits (68), Expect = 0.12
 Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
 Frame = +1

Query: 391 TTSVVLHKYKFKQQVNAVKFSPDGKYFAVCC-DNTVFVMTAPVHFTGEYRPFIMKRVFKK 567
           +T  +   +  ++ VN   FSPDG+  A    D++V +       TG++   +   V   
Sbjct: 378 STKPITKMHGHQKVVNHASFSPDGRCIATASFDSSVRLWDGK---TGKFLATLRGHVAA- 433

Query: 568 ALDEVTCLDWSSCSRLLAVGSKDTTTKIHTV 660
               V    WS+ SRLL   S+DTT K+  V
Sbjct: 434 ----VYQCAWSTDSRLLVSSSQDTTLKVWDV 460


>SPAC9G1.05 |||actin cortical patch component Aip1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 595

 Score = 30.7 bits (66), Expect = 0.21
 Identities = 24/77 (31%), Positives = 36/77 (46%)
 Frame = +1

Query: 433 VNAVKFSPDGKYFAVCCDNTVFVMTAPVHFTGEYRPFIMKRVFKKALDEVTCLDWSSCSR 612
           +  + +SPDGKY A C D +  V    V +    R  I  R +      +  + W++ S 
Sbjct: 482 ITCLAYSPDGKYLA-CGDASGKV----VLYDANSREVITSR-WAFHTGRILGMSWNAKST 535

Query: 613 LLAVGSKDTTTKIHTVE 663
            LA  S DT   I++VE
Sbjct: 536 HLATASLDTNIHIYSVE 552


>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 922

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
 Frame = +1

Query: 421 FKQQVNAVKFSPDGKYFAV-CCDNTVFVMTAPVHFTGEYRPFIMKRVFKKALDEVTCLDW 597
           F   V AVK SPDG++ A    DNTV      V++    + F+   ++   L  V  +D 
Sbjct: 533 FTDDVLAVKISPDGRFVAASLLDNTV-----KVYYLDSLKFFL--NLYGHKL-PVLSMDI 584

Query: 598 SSCSRLLAVGSKDTTTKIHTVEY 666
           S  S+LL   S D   KI  +++
Sbjct: 585 SYDSKLLVTCSADKNVKIWGLDF 607


>SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 494

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 24/100 (24%), Positives = 44/100 (44%), Gaps = 2/100 (2%)
 Frame = +1

Query: 196 VLFSKDGNCVISPVGNRITIYNLKQNKSNTLSFESHYNYTAVDIAPNGMT--LLAVTEKG 369
           VL  + G+ VIS  G  I +++L   +       S++  +   +A N     LL+    G
Sbjct: 213 VLPMQSGSTVISAGGPSIKVWDLVAGRQTPTKKLSNHQKSITCLAMNSENTRLLSGGLDG 272

Query: 370 EAQIISLTTSVVLHKYKFKQQVNAVKFSPDGKYFAVCCDN 489
             +I +++   V+H  K+   + ++  SPD     V   N
Sbjct: 273 HVKIYNISDWKVVHGMKYSGPILSMGLSPDSCNLVVGMSN 312


>SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit
           Sop2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 377

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 32/144 (22%), Positives = 56/144 (38%), Gaps = 6/144 (4%)
 Frame = +1

Query: 223 VISPVGNRITIYNLKQNK-SNTLSFESHYNY-TAVDIAPNGMTLLAVTEKGEAQIISL-- 390
           V +   N++ +Y    N   +  +F  H    T VD AP    ++  ++   A +     
Sbjct: 27  VTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRP 86

Query: 391 --TTSVVLHKYKFKQQVNAVKFSPDGKYFAVCCDNTVFVMTAPVHFTGEYRPFIMKRVFK 564
             T    L   +  +    V++SP+   FAV     V  +    +F  E   ++ K + +
Sbjct: 87  DGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVC---YFEQENDWWVSKHLKR 143

Query: 565 KALDEVTCLDWSSCSRLLAVGSKD 636
                +  LDW   + LLA G  D
Sbjct: 144 PLRSTILSLDWHPNNVLLAAGCAD 167


>SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +1

Query: 574 DEVTCLDW-SSCSRLLAVGSKDTTTKI 651
           D+V+CLDW S    +L  GS D T KI
Sbjct: 298 DKVSCLDWYSKAPSVLLSGSYDKTAKI 324


>SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 296

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -2

Query: 431 CCLNLYLCNTTEVVRLIICASPFSVTA 351
           CCLN +LC +  ++   +C +  ++TA
Sbjct: 70  CCLNGWLCESNNILVCDVCRNKINLTA 96


>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1419

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +1

Query: 40   FHDEYGVILYAVVSNIKSKFNRIIT*LRSTLVTMKFNYK 156
            FH E GVI+  V S+ + +FN+ +     TL T  FN K
Sbjct: 1262 FHPEQGVIVAHVTSHPRLRFNQFL----GTLSTFGFNTK 1296


>SPBC3B9.15c |scp1||sterol regulatory element binding protein
           Scp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = +1

Query: 394 TSVVLHKYKFKQQVNAVKFSPDGKYFAVCCDNTVFVM 504
           T +VL K +  + + A+   P G Y ++   +T+F++
Sbjct: 629 TKLVLSKEQMPRTLKAIALDPQGNYVSLFSKDTLFIL 665


>SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 509

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
 Frame = +1

Query: 544 IMKRV--FKKALDEVTC-LDWSSCSRLLAVGSKDTTTKIHTVEYLENITMY 687
           +M+RV   KK   E  C L+W+      A G  D    I  ++ LEN   Y
Sbjct: 277 MMRRVHTIKKVHQEQVCGLEWNYDGTQFASGGNDNLVCIFDIDSLENKKFY 327


>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 512

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +1

Query: 427 QQVNAVKFSPDGKYFAVCCDNTVFVMTAPVH 519
           Q VN V+F+P+G   A   D    ++  P +
Sbjct: 68  QAVNVVRFNPEGNILATAGDEGTIMLWVPTN 98


>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
            subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +1

Query: 28   NRTQFHDEYGVILYAVVSNIKSKFNRII 111
            +R ++ DEYGV+   + S   ++F +I+
Sbjct: 1305 SRDEYQDEYGVLQEEIESTFSNRFLKIL 1332


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +1

Query: 238 GNRITIYNLKQNKSNTLSFESHY 306
           G + T+YN +++  +TLSF+ +Y
Sbjct: 367 GLKQTVYNYQEDPKSTLSFKKNY 389


>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +1

Query: 433 VNAVKFSPDGKYFAVCCDNTVFVM 504
           V +V+FSP+G+Y A   D+ V ++
Sbjct: 77  VTSVRFSPNGQYLASGSDDRVVII 100


>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
           Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = +1

Query: 556 VFKKALDEVTCLDWSSCSRLLAVGSKDTTTKIHTVEYLENI 678
           VF    DEV  + +S   R LA  SKD T  I  V  L+ +
Sbjct: 208 VFHDHSDEVWQISYSHNGRYLASASKDKTAIIFDVVNLKRV 248


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,928,531
Number of Sequences: 5004
Number of extensions: 60560
Number of successful extensions: 216
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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