Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc9c03
(664 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q9VVL6 Cluster: Mediator of RNA polymerase II transcrip... 209 4e-53
UniRef50_A0JLT2 Cluster: Mediator of RNA polymerase II transcrip... 140 2e-32
UniRef50_A7RLX2 Cluster: Predicted protein; n=1; Nematostella ve... 131 2e-29
UniRef50_UPI0000E48F6A Cluster: PREDICTED: similar to mediator c... 121 1e-26
UniRef50_Q9N4F2 Cluster: Mediator of RNA polymerase II transcrip... 64 4e-09
UniRef50_A7I5H4 Cluster: Multi-sensor signal transduction histid... 40 0.053
UniRef50_Q55BA4 Cluster: Putative uncharacterized protein; n=1; ... 40 0.071
UniRef50_UPI000069EE22 Cluster: Alpha-protein kinase 3 (EC 2.7.1... 34 2.7
UniRef50_A1RAJ7 Cluster: Putative membrane protein; n=1; Arthrob... 34 2.7
UniRef50_O43614 Cluster: Orexin receptor type 2; n=41; Coelomata... 34 2.7
UniRef50_UPI000023D5E1 Cluster: hypothetical protein FG00887.1; ... 33 4.6
UniRef50_Q7XFS7 Cluster: Wall-associated kinase 3, putative; n=4... 33 6.1
UniRef50_Q2FSI3 Cluster: Nucleic acid binding, OB-fold, tRNA/hel... 33 8.1
>UniRef50_Q9VVL6 Cluster: Mediator of RNA polymerase II
transcription subunit 19; n=7; Endopterygota|Rep:
Mediator of RNA polymerase II transcription subunit 19 -
Drosophila melanogaster (Fruit fly)
Length = 337
Score = 209 bits (511), Expect = 4e-53
Identities = 108/172 (62%), Positives = 119/172 (69%), Gaps = 2/172 (1%)
Frame = +1
Query: 145 SPKSSPRGA-RSPVVSRQDSSGTLKTTISLGKNPSIVHSGPFYLMKEPPGECELTGATNL 321
SPKSSP G RSPVV+RQDSSGTLKTTISLGK P+I+H+GPFY MKEPP + ELTG +L
Sbjct: 11 SPKSSPHGGGRSPVVARQDSSGTLKTTISLGKTPTIIHTGPFYSMKEPPAKAELTGDKDL 70
Query: 322 MAYYGLVHSYSKFNGKKLKESLSSFLPNLPGIVDGPGQD-DNSTLSSVIAKRPIGGKELL 498
M YGL H+ +KF KK KESL+SFL N+PGI D +NSTL SVI K PIGGKELL
Sbjct: 71 MTEYGLHHTLTKFKEKKFKESLASFLQNIPGINDLITHPVENSTLRSVIEKPPIGGKELL 130
Query: 499 PLTSAQLAGFRLHPGPLPEQYRYVSATPPXXXXXXXXXXXXXDGAPPGARDT 654
PLT QLAGFRLHPGPLPEQYR TP DG G T
Sbjct: 131 PLTPVQLAGFRLHPGPLPEQYRTTYVTPARKHKNKHKKQKHKDGVTTGQEST 182
>UniRef50_A0JLT2 Cluster: Mediator of RNA polymerase II
transcription subunit 19; n=31; Euteleostomi|Rep:
Mediator of RNA polymerase II transcription subunit 19 -
Homo sapiens (Human)
Length = 244
Score = 140 bits (340), Expect = 2e-32
Identities = 66/118 (55%), Positives = 82/118 (69%)
Frame = +1
Query: 232 GKNPSIVHSGPFYLMKEPPGECELTGATNLMAYYGLVHSYSKFNGKKLKESLSSFLPNLP 411
G + S GPFYLM+E PG ELTG+TNL+ +Y L +Y+KF GKK+KE LS+FLP+LP
Sbjct: 54 GADKSGAGCGPFYLMRELPGSTELTGSTNLITHYNLEQAYNKFCGKKVKEKLSNFLPDLP 113
Query: 412 GIVDGPGQDDNSTLSSVIAKRPIGGKELLPLTSAQLAGFRLHPGPLPEQYRYVSATPP 585
G++D PG DNS+L S+I K PI P+T LAGFRLH GPLPEQ R + PP
Sbjct: 114 GMIDLPGSHDNSSLRSLIEKPPILSSSFNPITGTMLAGFRLHTGPLPEQCRLMHIQPP 171
>UniRef50_A7RLX2 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 214
Score = 131 bits (316), Expect = 2e-29
Identities = 64/125 (51%), Positives = 88/125 (70%), Gaps = 1/125 (0%)
Frame = +1
Query: 211 LKTTISLGKNPSIVHSGPFYLMK-EPPGECELTGATNLMAYYGLVHSYSKFNGKKLKESL 387
+ TT + + + PFYL++ EPP ++ G++NL+ GL SY KF GKK+KE+L
Sbjct: 2 VSTTSTPTSSTHTTTTSPFYLLRNEPPTPTDINGSSNLLVQNGLEQSYQKFCGKKVKENL 61
Query: 388 SSFLPNLPGIVDGPGQDDNSTLSSVIAKRPIGGKELLPLTSAQLAGFRLHPGPLPEQYRY 567
S+FLP+LPG +D G +NS L SVI K PIGGKELLPL S L+GFRL+PGP+PEQ+R+
Sbjct: 62 SAFLPHLPGYIDEKGTPENS-LRSVIDKPPIGGKELLPLPSHALSGFRLNPGPIPEQFRF 120
Query: 568 VSATP 582
++ P
Sbjct: 121 MTQQP 125
>UniRef50_UPI0000E48F6A Cluster: PREDICTED: similar to mediator
complex, subunit, putative; n=1; Strongylocentrotus
purpuratus|Rep: PREDICTED: similar to mediator complex,
subunit, putative - Strongylocentrotus purpuratus
Length = 239
Score = 121 bits (292), Expect = 1e-26
Identities = 70/158 (44%), Positives = 94/158 (59%), Gaps = 5/158 (3%)
Frame = +1
Query: 124 FRKVEPYSPKSSPRG--ARSPVVSRQDSSGTLKTTISLGKNPSIVHSGPFYLMKEPPGE- 294
F K P S+ G ++ P RQ S K +S P V PFYL+K+PP
Sbjct: 3 FFKRSPSDSSSNYGGIPSKMPTPIRQRSPMPTKQFLS----PPSVDPEPFYLLKDPPISG 58
Query: 295 --CELTGATNLMAYYGLVHSYSKFNGKKLKESLSSFLPNLPGIVDGPGQDDNSTLSSVIA 468
E+TG T+++++YGL HSY+KF+ KKLKE LS+FLP LPG +D DNS+L SVI
Sbjct: 59 PGSEVTGETHMISHYGLEHSYNKFSTKKLKEQLSAFLPLLPGNIDTVSSQDNSSLQSVIE 118
Query: 469 KRPIGGKELLPLTSAQLAGFRLHPGPLPEQYRYVSATP 582
K PI KE+ T+ L GF+LHPG +P+QY+ + P
Sbjct: 119 KPPI-TKEITTFTTGMLQGFKLHPGSIPDQYKLLHHQP 155
>UniRef50_Q9N4F2 Cluster: Mediator of RNA polymerase II
transcription subunit 19; n=1; Caenorhabditis
elegans|Rep: Mediator of RNA polymerase II transcription
subunit 19 - Caenorhabditis elegans
Length = 199
Score = 63.7 bits (148), Expect = 4e-09
Identities = 39/105 (37%), Positives = 62/105 (59%), Gaps = 2/105 (1%)
Frame = +1
Query: 262 PFYLMKEP-PGECELTGATNLMAYYGLVHSYSKFNG-KKLKESLSSFLPNLPGIVDGPGQ 435
PFY +K P E+ G +L+ Y L F+G +++KE +SSFLP++ G
Sbjct: 21 PFYTLKALLPPYSEIQGNHDLLMSYELGPVEGGFSGSRRVKEKISSFLPHIIGEFHLDAT 80
Query: 436 DDNSTLSSVIAKRPIGGKELLPLTSAQLAGFRLHPGPLPEQYRYV 570
+ S+L ++I K PI KE+ LTS+ + GF+L GP+ E+YR++
Sbjct: 81 KEASSLRALIEKPPIH-KEISNLTSSSMQGFKLSAGPVDERYRHL 124
>UniRef50_A7I5H4 Cluster: Multi-sensor signal transduction histidine
kinase; n=1; Candidatus Methanoregula boonei 6A8|Rep:
Multi-sensor signal transduction histidine kinase -
Methanoregula boonei (strain 6A8)
Length = 431
Score = 39.9 bits (89), Expect = 0.053
Identities = 17/42 (40%), Positives = 28/42 (66%)
Frame = -3
Query: 293 SPGGSFIK*NGPLCTIDGFLPKDIVVLSVPEESWRETTGDLA 168
SP FI+ N LCTI G+ P++++ LS+P + ++ + DLA
Sbjct: 110 SPDLRFIRVNNALCTISGYTPEELLTLSIPAITVQKESADLA 151
>UniRef50_Q55BA4 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 299
Score = 39.5 bits (88), Expect = 0.071
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +1
Query: 256 SGPFYLMKEPPGECE-LTGATNLMAYYGLVHSYSKFNGKKLKESLSSFLPNLPG 414
S YL+ E +TG TNL+ ++ L + ++FN K L + S++ NLPG
Sbjct: 2 SSSLYLINPIEKSSENITGETNLLEHFNLYKTLNEFNSKHLSSTYKSYVKNLPG 55
>UniRef50_UPI000069EE22 Cluster: Alpha-protein kinase 3 (EC
2.7.11.-) (Muscle alpha-protein kinase).; n=3;
Tetrapoda|Rep: Alpha-protein kinase 3 (EC 2.7.11.-)
(Muscle alpha-protein kinase). - Xenopus tropicalis
Length = 190
Score = 34.3 bits (75), Expect = 2.7
Identities = 13/27 (48%), Positives = 20/27 (74%)
Frame = +1
Query: 127 RKVEPYSPKSSPRGARSPVVSRQDSSG 207
+ +E P + P+G+RSPV+SR+ SSG
Sbjct: 132 KAIEGLQPPAKPKGSRSPVISRKTSSG 158
>UniRef50_A1RAJ7 Cluster: Putative membrane protein; n=1;
Arthrobacter aurescens TC1|Rep: Putative membrane
protein - Arthrobacter aurescens (strain TC1)
Length = 279
Score = 34.3 bits (75), Expect = 2.7
Identities = 24/81 (29%), Positives = 38/81 (46%)
Frame = +1
Query: 154 SSPRGARSPVVSRQDSSGTLKTTISLGKNPSIVHSGPFYLMKEPPGECELTGATNLMAYY 333
+SPR R P +R + LK +S + + G F + + G+ L G T + Y
Sbjct: 2 ASPRVTRDPH-ARVTNLVLLKLLVSARLRSQLAYRGSF--LSDVAGQV-LLGVTEFVELY 57
Query: 334 GLVHSYSKFNGKKLKESLSSF 396
+VH+ S F G L ++L F
Sbjct: 58 AIVHNVSTFGGMTLAQTLVVF 78
>UniRef50_O43614 Cluster: Orexin receptor type 2; n=41;
Coelomata|Rep: Orexin receptor type 2 - Homo sapiens
(Human)
Length = 444
Score = 34.3 bits (75), Expect = 2.7
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Frame = +1
Query: 55 CLEYLIYLSSFRR*WSSKM---MSDQFRKVEPYSPKSSPRGARSPVVSRQDS 201
CL L YL FR+ W ++ S RK +P P S PRG P SR +
Sbjct: 237 CLMVLAYLQIFRKLWCRQIPGTSSVVQRKWKPLQPVSQPRGPGQPTKSRMSA 288
>UniRef50_UPI000023D5E1 Cluster: hypothetical protein FG00887.1;
n=1; Gibberella zeae PH-1|Rep: hypothetical protein
FG00887.1 - Gibberella zeae PH-1
Length = 662
Score = 33.5 bits (73), Expect = 4.6
Identities = 18/54 (33%), Positives = 27/54 (50%)
Frame = +1
Query: 127 RKVEPYSPKSSPRGARSPVVSRQDSSGTLKTTISLGKNPSIVHSGPFYLMKEPP 288
++++P P + PR + P Q+S GT+ +T KN S S P L PP
Sbjct: 510 KRIKPKQPLAGPRLKQRPSDGSQNSRGTVTSTSMKSKNTSPTKSSP--LASSPP 561
>UniRef50_Q7XFS7 Cluster: Wall-associated kinase 3, putative; n=4;
Oryza sativa|Rep: Wall-associated kinase 3, putative -
Oryza sativa subsp. japonica (Rice)
Length = 303
Score = 33.1 bits (72), Expect = 6.1
Identities = 18/48 (37%), Positives = 27/48 (56%)
Frame = -3
Query: 590 RFGGVALTYLYCSGSGPGCNRKPAN*ALVNGSNSLPPIGLLAITELRV 447
R GGV + Y + G GPGC+R + V+ + PI +LA T ++V
Sbjct: 33 RCGGVDIPYPF--GIGPGCSRHGFELSCVSNGSGAGPIAVLAGTSIQV 78
>UniRef50_Q2FSI3 Cluster: Nucleic acid binding, OB-fold,
tRNA/helicase-type; n=1; Methanospirillum hungatei
JF-1|Rep: Nucleic acid binding, OB-fold,
tRNA/helicase-type - Methanospirillum hungatei (strain
JF-1 / DSM 864)
Length = 609
Score = 32.7 bits (71), Expect = 8.1
Identities = 19/63 (30%), Positives = 32/63 (50%)
Frame = +1
Query: 148 PKSSPRGARSPVVSRQDSSGTLKTTISLGKNPSIVHSGPFYLMKEPPGECELTGATNLMA 327
P SP A+S V+ DSSGT++ T+ N ++ G +Y ++ + E G +L
Sbjct: 96 PSRSPSVAQSGVI--MDSSGTMRFTVWAKANAPVMEQGKWYRLESAVAD-EYNGQVSLKV 152
Query: 328 YYG 336
+ G
Sbjct: 153 HSG 155
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 669,973,632
Number of Sequences: 1657284
Number of extensions: 14288178
Number of successful extensions: 32227
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 31193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32212
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 50413227838
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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